Gene Information

Name : Nhal_0598 (Nhal_0598)
Accession : YP_003526169.1
Strain : Nitrosococcus halophilus Nc 4
Genome accession: NC_013960
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 611408 - 612742 bp
Length : 1335 bp
Strand : +
Note : PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; ATPase AAA; KEGG: noc:Noc_0723 two component, sigma-54 specific, fis family transcriptional regulator

DNA sequence : 
ATGAAAGAACATCCCTTGGCCCTCATTGTGGACGATGAGCCGGATATTCTAGAGTTACTTGAGCTTACCCTGGCGCCTAT
GGGCGTGGCTTGTCATAAGGCTGTCGATCTTGCCGAAGCCCGCCAATATTTGCAGCAGCATTCCTTCGATCTGTGCTTGA
CCGATATGCGCCTTCCGGATGGGGATGGTATTGAGTTGGTCAGGCTCATTAGCCAGCATTTCCCGGAGACACCGGTCGCG
GTGATTACGGCCCATGGCAGTGTGGAGACCGCGGTTGAAGCCCTGAAGTCGGGCGCTTTTGATTTTATCTCCAAACCGGT
GGATTTGCAGGCGCTTCGCAATCTGACCAACGCAGCCCTTAGACTCCCGCTTCGTTATCCCCAAAGGGAGCGGCGGACCC
GCTACCGGTTACTGGGAGAATCAGCCGCCATGCGGGCGGTACGCTCCAAAATCGCCAAGCTGGCACGGAGCCAAGCGCCG
GTCTACATTAGCGGTGAATCGGGCACCGGCAAGGAGCTGGTCGCCAGGCTCATCCATGAGCAAGGGCCCCGCTTGGAAGC
GCCCTTTGTCCCGGTAAACTGTGGCGCTATCCCCAATGAGTTGATGGAAAGCGAGTTTTTCGGCCATAAAAAGGGCAGTT
TTACCGGCGCCACCCATGATAAGCGAGGGCTGTTTCAAACCGCCGGTGGAGGGACCCTGTTTTTGGATGAAGTGGCCGAC
TTACCTTTACCCATGCAGGTCAAACTTTTGCGGGCTATCCAGGAGAAAAGCGTGCGGCCTATTGGCAGCGAGAAAGAAAT
TTCCGTGGATGTGCGTATTCTCTGTGCTACCCACAAGGACTTAGCCGCCTTAGTAAAGGAAGGCAGCTTCCGCCAGGATC
TCTTCTACCGGCTTAATGTTATTGAGTTGCCGGTTCCGCCCTTAAGACAACGGGCCAGTGATATTCCCCAGTTGGCCGAG
CATATTTTGAGTAAACTCGCCGGGATTAACCAAATCACTTGTCCTAAGTTGACTTCTGACGCCCTGGAGGCGCTACAAGT
TTACCCTTTCCCAGGGAATGTCCGCGAGTTGGAAAACACCCTCGAGCGGGCCATGACCTTGTGTGACTCCGAGATCATAG
AGGCCAAAGATTTGCACTTGCCTAAGGCGGAACCCCCCAGTACCCCGACATCACTGCCGGTAGGTTCGTTAGAAGAGTGT
TTGGAGGGCGTGGAAAGGCGGGCCATTCTCCAGGCTTTGGAACGAACCCATTACAACAAGACCGCTGCCGCCAAGCTCCT
TGGCATTACCTTCCGGGCTTTGCGTTATCGTTTAAAAAAACTGGAGTTGGAGTAA

Protein sequence : 
MKEHPLALIVDDEPDILELLELTLAPMGVACHKAVDLAEARQYLQQHSFDLCLTDMRLPDGDGIELVRLISQHFPETPVA
VITAHGSVETAVEALKSGAFDFISKPVDLQALRNLTNAALRLPLRYPQRERRTRYRLLGESAAMRAVRSKIAKLARSQAP
VYISGESGTGKELVARLIHEQGPRLEAPFVPVNCGAIPNELMESEFFGHKKGSFTGATHDKRGLFQTAGGGTLFLDEVAD
LPLPMQVKLLRAIQEKSVRPIGSEKEISVDVRILCATHKDLAALVKEGSFRQDLFYRLNVIELPVPPLRQRASDIPQLAE
HILSKLAGINQITCPKLTSDALEALQVYPFPGNVRELENTLERAMTLCDSEIIEAKDLHLPKAEPPSTPTSLPVGSLEEC
LEGVERRAILQALERTHYNKTAAAKLLGITFRALRYRLKKLELE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-97 49
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-97 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Nhal_0598 YP_003526169.1 Fis family transcriptional regulator BAC0467 Protein 1e-73 48
Nhal_0598 YP_003526169.1 Fis family transcriptional regulator BAC0089 Protein 6e-69 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Nhal_0598 YP_003526169.1 Fis family transcriptional regulator VFG1214 Protein 6e-125 64