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Name : Nhal_0439 (Nhal_0439) Accession : YP_003526014.1 Strain : Nitrosococcus halophilus Nc 4 Genome accession: NC_013960 Putative virulence/resistance : Virulence Product : general secretory pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 450748 - 452490 bp Length : 1743 bp Strand : + Note : KEGG: noc:Noc_2895 type II secretion system protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; general secretory system protein E; SMART: AAA ATPase DNA sequence : ATGGTGCAACAACTTGAAAAGACGGTTCCCATTACGCCTACTTCTGGAGAGGAGGCGGTTCCCCAGAGTTTTGAGGAGGA GCTGGGTCAATATTTAATTGACCGGAGCAAACTGCGCGCAGCTGAATTTCGCCATGCTCGCCGTTTGGCGGCGGAGGAAG GTGTGCGGCTTTCCGTCATGTTGATAAGACTAGGGCTGGTCTCTGAACGGGACATGGCAGAGGCCTTCTCCGCATTGCTT GATCTGCCCCTGTTGGCAACCAACGATTATGATAGCGGAGGGCTAAATGGCCAGGTTTCATTGCGCTTCCTCAAAGAATC CCGGGCGGTGCCGGTGTTAGAGGAAGAGGACGCAGTGGTGGTAGCAATGGCCGATCCTAGCGATCGTTATGTCCAGGAGG CCATTGCCCTCGCCTACGGCAAACCCATAAGCCTGCGGGTTGGTTTACCCTCGGAGATCGAAGCGGCCCTTGAACGTCAG GCAGGAGGTAAATCGGCGATGGGGCAGATCGTCGAGCATCTCGGGGCAGACGAGGAGGCGGAGACGGATGTCCAACATCT GAAGGATATGGCCAGCGAGGCCCCGGTCGTACGCCTCGTGAATTTACTGATCCAGCGAGCGGTGGAATCCCGGGCTTCCG ATATCCATATCGAGCCTTTTGAGAACAGTCTTCGAGTCCGCTACCGGATTGATGGGGTGTTGCGAGATGTGGAGGCTCCC CCGGCGCGCTCTACGGCAGCCGTGATTTCCCGCTTTAAGATTATGGCTAAGCTCAATATTGCTGAGCGGCGATTGCCTCA GGATGGACGAATCCAGCTTCGTATCCAAGGGCGGGAATTGGATTTGCGGGTTTCCACGGTGCCGACCCTCTATGGCGAAA GTGTAGTACTGCGGCTGCTAGATAAGGGGAGTGTGGTGCTCGATTTTGATTCCTTGGGTTTCCAAGGCAGCACCTTAGAG CGGTTTCTCCGGGTATTAGAGATGCCCCATGGGATTATTATCGTGACCGGTCCCACCGGCAGTGGTAAAAGTACTACCCT TTACACGGCCCTACATAAGCTCAATACCCCGGATCGAAAGATTGTGACCGTGGAAGACCCGGTGGAATATCAGCTTGAAG GGATTAATCAAATTCAGGTGAAGCCTCAGATTGGCCTCACTTTTGCCGGTGCCTTGCGGTCTATCGTGCGCCAGGACCCG GATGTCATCATGATCGGTGAAATGCGGGATCGGGAAACCGCTGGCATCGCCGTTCAATCGGCCCTGACGGGCCATTTGGT CCTTTCTACCCTCCATACCAATGATGCCGCAGGCGGGGTTACCCGGTTATTGGATATGGGCGTGGAAGATTATCTTCTGA CCTCCACCGTTAATGGTATTTTGGCGCAACGCCTGGTTCGTACCCTCTGTAAGCATTGCGCCGAGCCTTACGAGGCTATG CCCGAGATAATAGAGGAGCTGGAATTGCACCGTTTTAGCGAGGAGAAGCCGGTAATGTTGTATCGCCCCGTTGGCTGTGA ACACTGTAACGGCATTGGTTATCATGGCCGGGCTGCGATTATGGAGTTTTTGGTCATGAGTGACCCTATTCGTCGTCTCG TGCTCCAGCATGCCGATGCGGGAAATATCCAGGACCAGGCCCAGAAAGAAGGCATGCGGATTATGTATGAAGATGGTCTT CTCAAGGCGCTATCCGGCCTCACCACCATTGAAGAGGTGATCCGAGTCAGTCAGGAGTCCTGA Protein sequence : MVQQLEKTVPITPTSGEEAVPQSFEEELGQYLIDRSKLRAAEFRHARRLAAEEGVRLSVMLIRLGLVSERDMAEAFSALL DLPLLATNDYDSGGLNGQVSLRFLKESRAVPVLEEEDAVVVAMADPSDRYVQEAIALAYGKPISLRVGLPSEIEAALERQ AGGKSAMGQIVEHLGADEEAETDVQHLKDMASEAPVVRLVNLLIQRAVESRASDIHIEPFENSLRVRYRIDGVLRDVEAP PARSTAAVISRFKIMAKLNIAERRLPQDGRIQLRIQGRELDLRVSTVPTLYGESVVLRLLDKGSVVLDFDSLGFQGSTLE RFLRVLEMPHGIIIVTGPTGSGKSTTLYTALHKLNTPDRKIVTVEDPVEYQLEGINQIQVKPQIGLTFAGALRSIVRQDP DVIMIGEMRDRETAGIAVQSALTGHLVLSTLHTNDAAGGVTRLLDMGVEDYLLTSTVNGILAQRLVRTLCKHCAEPYEAM PEIIEELELHRFSEEKPVMLYRPVGCEHCNGIGYHGRAAIMEFLVMSDPIRRLVLQHADAGNIQDQAQKEGMRIMYEDGL LKALSGLTTIEEVIRVSQES |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-95 | 47 |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-95 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Nhal_0439 | YP_003526014.1 | general secretory pathway protein E | VFG0182 | Protein | 2e-96 | 49 |
| Nhal_0439 | YP_003526014.1 | general secretory pathway protein E | VFG2048 | Protein | 5e-96 | 47 |
| Nhal_0439 | YP_003526014.1 | general secretory pathway protein E | VFG0112 | Protein | 3e-97 | 41 |
