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Name : Nhal_3847 (Nhal_3847) Accession : YP_003529246.1 Strain : Nitrosococcus halophilus Nc 4 Genome accession: NC_013960 Putative virulence/resistance : Virulence Product : type IV-A pilus assembly ATPase PilB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 3965956 - 3967644 bp Length : 1689 bp Strand : + Note : TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; general secretory system II protein E domain protein; KEGG: noc:Noc_0312 type II secretion system protein E DNA sequence : ATGAACGGTCTGGCCCGCCGTTTAGTGGAAGATGGGCTACTTAACGAAGCGGATGCCCTGCAGGCTCATGAGCAGTCCCG CAAGGCCAGCATTCCCTTTGTCACTTACTTAGTCCAGCAAAAACTACTCAAAAGCCTGGATATCAGCCAAGCGGCCTCAC AAGAATTTGGCGTCCCCCTATTCGATCTTGATGCGTTGGATTTGGACTGCCTTCCCAAAGGCCTAGTGGAAGAGAAACTG ATCCGCCAGCACCAAGCATTACCCATCTTCAAGCGCGGGAATCGTCTGTTCGTTGCCGTGGCCGATCCTACCAACCTCCA GGCATTAGACGAAATTAAATTCCACGCGGGGATTAACACCGAAGCCATCCTCGTTGAAGAAGACAAACTAACCCGAACCA TTGACCGGGCCATGGAGGCCCAGGACACGTCCCTTGCCGATCTAAATGATACCGCGTTGGATGATCTCGATATTTCCGGG GGCGAAGAGGAGGCCCCGGAAAATTCTATCGAATCTGATGTCGATGATACACCTGTTGTACGCTTTATTAATAAGGCCCT GTTGGATGCCATTCATCAGGGGGCCTCGGATATTCACTTCGAGCCCTATGAGAAAATCTATCGGATTAGATACCGACAAG ATGGGGTGCTGCGGGAAGTCGTTTGCCCTCCCGTAAGCCTAGCAAACCGGCTAGCGGCTCGCCTTAAGGTCATGGCCCGC TTGGATATTTCCGAACGGCGCGTGCCCCAAGATGGGCGCATGAAAATGAGTATCTCCAAAAACCGAGCAATTGACTTTCG TGTCAATACCTGTCCCACTTTATTTGGTGAAAAAATCGTCCTTCGTATTCTGGACCCCTCCAGCGCCCAGTTGGGAATCG ACGCCCTCGGTTATGAGGAAAAACAAAAACAGCTCTTTCTAGAAACTATCCACCGGCCTTACGGGATGGTGCTGGTTACC GGCCCCACGGGCAGCGGTAAGACCGTCTCCCTTTATACCGCGCTGAATATTCTGAATACTGCGGACCGCAATATCTCCAC CGCCGAAGACCCGGCCGAAATCAACTTGCCCGGCATTAATCAGGTCAACGTATACCCGAAGGTAGGCCTGACTTTTGCTG GAGCCCTAAGAGCCTTTTTACGCCAAGATCCCGATATCATCATGGTCGGTGAGATTCGGGATCTGGAAACGGCTGAAATT GCGATTAAAGCAGCCCAAACCGGTCATATGGTGCTCTCCACCCTCCATACCAACGACGCCCCCCAGACCCTGACCCGGCT ATTAAATATGGGGGTGGCTTCCTATAACATTGCCTCGGCGGTCTCCCTGATCATTGCCCAGCGCTTGGCACGGCGCCTTT GTTCCCAATGTAAAGCGCCCGAGAAGATCCCCCAGGAAGCCTTACTAGAAGAAGGCTTTACCCAAGCCCAGCTCGACACC TCCCCCACTATTTATAAGGCGGTAGGCTGCGAACGCTGCTCAGGAGGCTATAAGGGCCGAGTGGGCATCTATCAAGTGAT GCCCGTATCCGAGGAGATGGGACGCATCATTATGGCAGGGGGCAACTCCATGGAACTTTCAGAACAGGCCAAAAAAGAAG GCGTGGCCGATCTACGCCAGTCTGGGCTCAAAAAGGTTATTGATGGCATTACCAGTTTAGAGGAAATTAACCGAGTGACG AAGGAGTAA Protein sequence : MNGLARRLVEDGLLNEADALQAHEQSRKASIPFVTYLVQQKLLKSLDISQAASQEFGVPLFDLDALDLDCLPKGLVEEKL IRQHQALPIFKRGNRLFVAVADPTNLQALDEIKFHAGINTEAILVEEDKLTRTIDRAMEAQDTSLADLNDTALDDLDISG GEEEAPENSIESDVDDTPVVRFINKALLDAIHQGASDIHFEPYEKIYRIRYRQDGVLREVVCPPVSLANRLAARLKVMAR LDISERRVPQDGRMKMSISKNRAIDFRVNTCPTLFGEKIVLRILDPSSAQLGIDALGYEEKQKQLFLETIHRPYGMVLVT GPTGSGKTVSLYTALNILNTADRNISTAEDPAEINLPGINQVNVYPKVGLTFAGALRAFLRQDPDIIMVGEIRDLETAEI AIKAAQTGHMVLSTLHTNDAPQTLTRLLNMGVASYNIASAVSLIIAQRLARRLCSQCKAPEKIPQEALLEEGFTQAQLDT SPTIYKAVGCERCSGGYKGRVGIYQVMPVSEEMGRIIMAGGNSMELSEQAKKEGVADLRQSGLKKVIDGITSLEEINRVT KE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-80 | 47 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-80 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Nhal_3847 | YP_003529246.1 | type IV-A pilus assembly ATPase PilB | VFG0112 | Protein | 2e-168 | 61 |
| Nhal_3847 | YP_003529246.1 | type IV-A pilus assembly ATPase PilB | VFG0233 | Protein | 1e-133 | 58 |
| Nhal_3847 | YP_003529246.1 | type IV-A pilus assembly ATPase PilB | VFG1880 | Protein | 2e-160 | 57 |
| Nhal_3847 | YP_003529246.1 | type IV-A pilus assembly ATPase PilB | VFG2048 | Protein | 8e-82 | 48 |
| Nhal_3847 | YP_003529246.1 | type IV-A pilus assembly ATPase PilB | VFG0182 | Protein | 4e-87 | 47 |
