Gene Information

Name : Nhal_3545 (Nhal_3545)
Accession : YP_003528956.1
Strain : Nitrosococcus halophilus Nc 4
Genome accession: NC_013960
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 3645227 - 3646624 bp
Length : 1398 bp
Strand : +
Note : PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: psa:PST_0364 mutant NtrC-l

DNA sequence : 
GTGACAAGAGAAGAGATTCGTCCTAAGGAACGGGTACTGATTGTCGAAGACGATGAAGCCCTGCGTCGCCTGCTAGAGGA
AGAACTGACCGATTCAGGTTTGCAAGTACGCACTGCCGGGGAGGTGGATTCGGCTTGGCAGATACTCAAAACCTGGCTGC
CTGAATTGATCCTTAGCGACTTATACTTGCCGGGTGCCAATGGCGTGGAATTACTAGAACGGGTACGTACCCACCCTGTT
CCCCCTGGATTCATTATGATCACGGCATTCGGAACCATCAACCAAGCAGTCGAGGCGCTCAAACTAGGCGCTGACGATTT
TCTTACTAAGCCCCTGGATCTCGACCATTTGATGCTCTGCGTTATCCGTATCCTGGAGAATCGACGCTTAAAAGAAGAAG
TGCAACATTTTCGAGAACTGCTGAACGACGATAACTTTCATGGCATTATCGGCCGCAGCATCCCCATGCAAACCCTTTTT
GCAACCATTCGCCAACTAGCCCACGCGGCAGGTCCAGTATTAATTACCGGGGAGAGCGGCGTAGGCAAAGAATTAGTAGC
ACGGGCTATTCACCGGGAAAGCGGGCGGGCCGGAGGCCCCTTCATCGCTGTCAACTGTGCGGGCATCCCCACCGAACTGT
TAGAGAGCGAATTTTTCGGGCATGCCGCAGGGGCTTTCACCGGCGCCAACAATGCCCGTAAGGGGTTATTTGCGGAGGCA
GAAGGAGGAACGCTACTCTTAGATGAGATTGCAGAAATGCCGTTAGCACTGCAAGCCAAGCTGCTGCGTATCCTTCAAGA
TGGCCGTGTTCGACCTTTAGGGGCTAATCAGGAACGATGCGTGGACGTTCGGATCATAGCCGCGACTAATCGCAACCTTG
AGGAGGAGGTCAACCAGGGGCGGTTTCGAGAAGACTTGTTTTATAGGCTAGAGACCTTTGTCCTGCCGGTCCCTCCCCTG
CGGGATCGGGGGGAAGATCTAGATCTACTTATAGCGCGGTTTCTCGATCTATTTCGCACCCAATTGAGACGAGAAGTGCG
CGGTATCCATCCCTCCGCCCTTGCTCATCTCAAAGCCTATCCGTTTCCGGGTAATGTGCGGGAACTACGCAACACTATCG
AGCGTGCTGTCGTCTTCTGTCACGAAAAAGAAATCAAATTATTCCATCTGCCTGAACGCATGAGAAGAGTGCCTAAATCC
AAGTCTAGGGCGAAGAATCTATCGGAGTCCCTCTCCCCATCGGATGAGAGCATGCTGTCTACCCTAGGGGAAATTGAACA
GAGTTATATCCATTATGTCCTGGATCAAGTAGGAGGGAACAAACGCCGCGCCGCAGCCCTGCTCGGCATCAGCCGCCGCA
CTTTATACCGGCGTCTTGGCGAAGAAGAATCCAGTTAA

Protein sequence : 
MTREEIRPKERVLIVEDDEALRRLLEEELTDSGLQVRTAGEVDSAWQILKTWLPELILSDLYLPGANGVELLERVRTHPV
PPGFIMITAFGTINQAVEALKLGADDFLTKPLDLDHLMLCVIRILENRRLKEEVQHFRELLNDDNFHGIIGRSIPMQTLF
ATIRQLAHAAGPVLITGESGVGKELVARAIHRESGRAGGPFIAVNCAGIPTELLESEFFGHAAGAFTGANNARKGLFAEA
EGGTLLLDEIAEMPLALQAKLLRILQDGRVRPLGANQERCVDVRIIAATNRNLEEEVNQGRFREDLFYRLETFVLPVPPL
RDRGEDLDLLIARFLDLFRTQLRREVRGIHPSALAHLKAYPFPGNVRELRNTIERAVVFCHEKEIKLFHLPERMRRVPKS
KSRAKNLSESLSPSDESMLSTLGEIEQSYIHYVLDQVGGNKRRAAALLGISRRTLYRRLGEEESS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 9e-58 44
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 9e-58 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Nhal_3545 YP_003528956.1 Fis family transcriptional regulator BAC0089 Protein 1e-71 43
Nhal_3545 YP_003528956.1 Fis family transcriptional regulator BAC0467 Protein 5e-62 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Nhal_3545 YP_003528956.1 Fis family transcriptional regulator VFG1214 Protein 2e-61 42
Nhal_3545 YP_003528956.1 Fis family transcriptional regulator VFG0116 Protein 8e-54 41