Gene Information

Name : Nhal_3047 (Nhal_3047)
Accession : YP_003528488.1
Strain : Nitrosococcus halophilus Nc 4
Genome accession: NC_013960
Putative virulence/resistance : Virulence
Product : response regulator receiver
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3123156 - 3123815 bp
Length : 660 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: noc:Noc_1354 two comoponent transcriptional regulator

DNA sequence : 
ATGCGCCTGTTACTGGTGGAAGACAATATAGCCCTAGCCGATGAACTATTACCCCTGTTTAAGGGCCATGGCTATGCGGT
GGATTGGCGGGTGGATGGCCGGGATGCGCTGCTGGCTGCCCACGATGATCCTTATGATTTAGTAATTCTGGATCTAGGCC
TGCCAGGTTTAGACGGTCTCCAAGTATTGCAGCGCTGGCGCGCTGAGGGACTAACTTTGCCGGTGTTGATTCTTACCGCC
CGGGATGCTTGGGCGGAGCGTCTAGAAGGTCTACGCGCTGGTGCTGATGATTACCTGAGCAAACCCTTCCATCCCGATGA
GTTACTGCTGCGAGTACAAGCCGTGTTACGGCGCAGCCATGGTGCGGTCAACAGCCCCCGGCTAGAAGTCGGGGGGCTGG
CCCTGGATGAAGACCGGCAAAGCATCTGGCGGGGCGATCAGGAATACGAACTGACCCGCGGTGAATTCCGTTTGTTACGT
TGCTTCATGCTGCACCCAGGCAAACTGCTTAGCCGCATGCAGTTGAACGAGCACCTTTACGATGGTGAAAGCGAGCGGGA
TAGCAATGTGCTGGAAGTCCATATCAATCGGCTACGCCGCAAATTGGGTCACCAAGTGATTGAAACTCGCCGGGGCCAAG
GTTACCGATTCCAAGGATGA

Protein sequence : 
MRLLLVEDNIALADELLPLFKGHGYAVDWRVDGRDALLAAHDDPYDLVILDLGLPGLDGLQVLQRWRAEGLTLPVLILTA
RDAWAERLEGLRAGADDYLSKPFHPDELLLRVQAVLRRSHGAVNSPRLEVGGLALDEDRQSIWRGDQEYELTRGEFRLLR
CFMLHPGKLLSRMQLNEHLYDGESERDSNVLEVHINRLRRKLGHQVIETRRGQGYRFQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-21 42
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-19 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-18 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Nhal_3047 YP_003528488.1 response regulator receiver NC_002516.2.879194.p Protein 3e-28 44
Nhal_3047 YP_003528488.1 response regulator receiver BAC0487 Protein 4e-22 43
Nhal_3047 YP_003528488.1 response regulator receiver BAC0083 Protein 1e-22 41
Nhal_3047 YP_003528488.1 response regulator receiver CP001918.1.gene5135. Protein 4e-16 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Nhal_3047 YP_003528488.1 response regulator receiver VFG0473 Protein 2e-27 45
Nhal_3047 YP_003528488.1 response regulator receiver VFG0596 Protein 8e-20 41