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Name : Nhal_2428 (Nhal_2428) Accession : YP_003527903.1 Strain : Nitrosococcus halophilus Nc 4 Genome accession: NC_013960 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 2493362 - 2495260 bp Length : 1899 bp Strand : + Note : PFAM: polysaccharide biosynthesis protein CapD; Male sterility domain; KR domain protein; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: DNA sequence : GTGCCAAAGAATGGAATCGGCCCTTTTTTGAGAGCCCAAAAGCGACGGGCGGTGGTGGTTGCCCACGATATCCTGGCCGT CTGCTTAGCCTGGGTGCTTGGCTATCTTACCCGTTACAATTTGTCGCCCTATTGGGTGGATTGGGAGTCTTGCCTCAGCG CTTTGCCGGTGATCATCGTGGTCCAGAGTGTGGTTTTGATCTGGACAGGGCTTTATCGAGGTTTGTGGCGTTTTGCCAGT ATTCCTGATTTACTCAATATTATTCGCGCCGTGGGTTACGGGGCCCTTTTAGTTGCGCTCACACTTTTCCTTATCAATCG TTTACACGGGGTGCCCCGAAGTATACTGCTGCTTTATCCTATCTTTTCCTTGCTTCTACTGGCAGGTCCCCGGCTTGCTT ATCGGATGTGGAAAGATCGCCGCCTTACCCTGGCTGCGGGTCCTCATCGAAAACGAGTCCTGATCTTAGGGGCGGGGCGG GCTGGTGACTTGCTGGCCCGTGATATGTTAGGTGAGGCAAACTACTTGCCGGTGGCGTTTCTGGATGACCGGCGCGATCT GGTCGGACGGCAGGTGCGGCGGATCCCCGTGGTCGGGGTGTTGGAGCAGTTGCCTGCCAAGGCAGATGAGATGGCTGCGG ATGTGGCCGTGATTGCCATGCCTTCCGCTAATAGCCGACAGATGCGCCGTGCTGTTTCCCTCTGTGAACAGGCGGGTATC CCCTATCGCACTTTGCCCCGTTTGCAAGACTTGGTCTCGGGTCAGGCAAGTATCAAGGAACTTCGTGAAGTGGCCATTGA TGATTTGCTTGGGCGGGACGAAGTATTTTTGGATTGGGATCGCATTCGCCAAAGTCTGGCGGGCAAATCCCTCCTGGTTA GTGGCGGGGGGGGATCGATTGGTTCCGAGCTTTGCCGGCAGTTGGCTCGCCTAGGACCGGCTGCCTTGATTGTCATCGAT AACAATGAATATCGACTCTATCGCATTGAGCAGGAACTGCGGCAGGGATTTTTAGCGCTTAATCTCTACACTTATTTGTG TGATGTCGGCGATGAAACCAGTGTGAAGGAGATCCTCGGGCGCCATCTTCCAGAAGTGGTGTTTCACGCGGCGGCTTATA AGCACGTGCCTCTCCTTGAACGGCAAGCACGGCAGGCGGTGGGGAACAATATTTTGGGGACTCGCTGTTTGGCGGAGGCG GCACAACAAATAGGTTGCGGGGCTTTTATTTTAATTTCGACTGATAAAGCGGTTAATCCAACCAGCGTTATGGGGGCAAG CAAGCGGGTCGCGGAACTTCTTTGCCAGGGCCTTAACCGGCGCAGTGGCACCCGATTTATTGTGGTCCGTTTTGGCAATG TACTAGGATCGGCAGGAAGCGTGGTCCCATTATTTCAAGCTCAAATTACCGCCGGCGGGCCAGTCACGGTAACCCACCCT GAAATGACCCGCTATTTCATGACTATTCCCGAGGCCTGCCATTTGATTACCCAGGCGGCTGTGATTGGTAAAGGGGGGGA AATATTCGTTTTGGATATGGGGGAGTCCATTAAGATTACAGAGCTTGCTGAGGAAATGATCCGTCTCTCTGGCCAGGAGT CGGAGGTGGAGATCGTTTATACGGGGCTTCGGCCAGGGGAAAAACTCCATGAGGAATTATTTTATGAGCATGAAGCCCCT TTGCCTACTGAATCACCCAAAATTTTGTTGGCCCAGCATGGGGTTGTTGAGTGGCAGCGTTTGGAACGGGAGTTAGCGGA GTTAGAGGGGGTTTGGCGGTTAGGAGATGAATTGCAGGTGAAGCAAGCACTGGAGCGCATATTATCGAAAGTGGGCGCAG AAGTTGAATTTCAACCGGCGGATTCCAAAGTGATAGCAATCAACAGGAGTCAATTATGA Protein sequence : MPKNGIGPFLRAQKRRAVVVAHDILAVCLAWVLGYLTRYNLSPYWVDWESCLSALPVIIVVQSVVLIWTGLYRGLWRFAS IPDLLNIIRAVGYGALLVALTLFLINRLHGVPRSILLLYPIFSLLLLAGPRLAYRMWKDRRLTLAAGPHRKRVLILGAGR AGDLLARDMLGEANYLPVAFLDDRRDLVGRQVRRIPVVGVLEQLPAKADEMAADVAVIAMPSANSRQMRRAVSLCEQAGI PYRTLPRLQDLVSGQASIKELREVAIDDLLGRDEVFLDWDRIRQSLAGKSLLVSGGGGSIGSELCRQLARLGPAALIVID NNEYRLYRIEQELRQGFLALNLYTYLCDVGDETSVKEILGRHLPEVVFHAAAYKHVPLLERQARQAVGNNILGTRCLAEA AQQIGCGAFILISTDKAVNPTSVMGASKRVAELLCQGLNRRSGTRFIVVRFGNVLGSAGSVVPLFQAQITAGGPVTVTHP EMTRYFMTIPEACHLITQAAVIGKGGEIFVLDMGESIKITELAEEMIRLSGQESEVEIVYTGLRPGEKLHEELFYEHEAP LPTESPKILLAQHGVVEWQRLERELAELEGVWRLGDELQVKQALERILSKVGAEVEFQPADSKVIAINRSQL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 7e-74 | 42 |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 9e-76 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Nhal_2428 | YP_003527903.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 2e-64 | 44 |
