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Name : Nhal_2343 (Nhal_2343) Accession : YP_003527818.1 Strain : Nitrosococcus halophilus Nc 4 Genome accession: NC_013960 Putative virulence/resistance : Virulence Product : Fis family transcriptional regulator Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG2204 EC number : - Position : 2417262 - 2418293 bp Length : 1032 bp Strand : + Note : PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: ATPase AAA; KEGG: noc:Noc_2361 two component sigma-54 specific, transcriptional regulator, fis famliy DNA sequence : ATGGTGCAACCCTCGGTTCTGGTCGTTAACAATGAACCAGCTCTGCGGGTGTTGGAAAAAGATGAGCCTCTGGTGGCCAT TGATCCCCATTCCCGGGCGGTAGTGGAGCTAGCGCGGCGGGTAGCTCGCAGCGAAGCCACGGTGCTTATCAGCGGTGAGA GTGGCACGGGGAAGGAGGTTTTAGCGCACTACATCCACCGCCACTCAAGGTGTTGCGAAGGTCCCTTTGTGGCTATCAAC TGCGCTGCCATTCCAGAGAATATGCTGGAGGCCACCCTGTTTGGCTATGAAAAGGGGGCTTTTACCGGCGCCCATCAGAC TCGTCCCGGCAAATTCGAGCAAGCCCAGGGAGGGACTTTGCTGCTTGATGAGATCTCGGAAATGGATTTGGATTTACAAG CTAAGTTGCTTCGCGTGTTGCAAGAACGGGAAGTGGAACGTTTAGGCGGGTGCAAAGTGATCCCCTTGGATGTGCGGATA TTGGCAACCACCAACCAGGATCTCCGGGAGCAGATAGGGAACGGCCAGTTTCGCGAAGATCTTTATTATCGCTTAAATGT TTTTCCTTTGCAGTTGCCGCCCCTGCGGGAGCGTACCCAGGATATTTTACCCCTAGCACGGCGACTGACTGCCAGCCGGG CTGCGGCAGTGGGTCGTCTCCCCCCCCGTTTGACGCTCGCTGCCGAAACCAAGTTGCTGGCTCACCCCTGGCCGGGAAAT ATCCGTGAACTGGATAATGTTATTCAGCGGGCATTGATTTTGGAAGAGGGAGAAGCCATCACCGCCCAGGCGCTGGCTTT TGAAGCGGGGATGGAGGCGCCGCTTCCAAGGGGGGTAGGAGAGCTTAGCAAGGATCTCAAAAGCCATGAAAAACAGCTTA TTCTCGATACGCTGGCGCGCTGTGGTGGGCGGCGGAAACAGGCGGCCGCCCAGTTAGGTATTAGCGAGCGAACCCTGCGC TATAAACTTGCTCGGCTACGGAAGGCAGGTGTGACTATCCCTGACCCCTCGAACACAAGATTTGTACCCTGA Protein sequence : MVQPSVLVVNNEPALRVLEKDEPLVAIDPHSRAVVELARRVARSEATVLISGESGTGKEVLAHYIHRHSRCCEGPFVAIN CAAIPENMLEATLFGYEKGAFTGAHQTRPGKFEQAQGGTLLLDEISEMDLDLQAKLLRVLQEREVERLGGCKVIPLDVRI LATTNQDLREQIGNGQFREDLYYRLNVFPLQLPPLRERTQDILPLARRLTASRAAAVGRLPPRLTLAAETKLLAHPWPGN IRELDNVIQRALILEEGEAITAQALAFEAGMEAPLPRGVGELSKDLKSHEKQLILDTLARCGGRRKQAAAQLGISERTLR YKLARLRKAGVTIPDPSNTRFVP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpS | AAC34753.1 | HrpS | Virulence | Hrp PAI | Protein | 2e-39 | 45 |
| hrpS | NP_791207.1 | type III transcriptional regulator HrpS | Virulence | Hrp PAI | Protein | 2e-39 | 45 |
| hrpR | AAC35799.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 4e-39 | 44 |
| hrpR | AAT96216.1 | HrpR | Virulence | T-PAI | Protein | 3e-40 | 44 |
| hrpR | AAT96162.1 | HrpR | Virulence | T-PAI | Protein | 3e-40 | 44 |
| hrpS | ABQ88367.1 | HrpS | Virulence | Hrp PAI | Protein | 4e-39 | 44 |
| hrpS | AAA17650.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 4e-39 | 44 |
| hrpS | AAC35800.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 3e-40 | 44 |
| hrpR | ABQ88368.1 | HrpR | Virulence | Hrp PAI | Protein | 1e-40 | 44 |
| hrpR | AAA17651.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 1e-40 | 44 |
| hrpR | AAC34752.1 | HrpR | Virulence | Hrp PAI | Protein | 3e-41 | 43 |
| hrpR | NP_791206.1 | type III transcriptional regulator HrpR | Virulence | Hrp PAI | Protein | 2e-41 | 43 |
| hrpS | AAT96161.1 | HrpS | Virulence | T-PAI | Protein | 9e-41 | 43 |
| hrpS | AAT96215.1 | HrpS | Virulence | T-PAI | Protein | 9e-41 | 43 |
| hrpS | AAD24684.1 | sigma-54-dependent enhancer-binding protein HrpS | Virulence | Hrp PAI | Protein | 3e-40 | 43 |
