Gene Information

Name : Nhal_2229 (Nhal_2229)
Accession : YP_003527707.1
Strain : Nitrosococcus halophilus Nc 4
Genome accession: NC_013960
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2309776 - 2311137 bp
Length : 1362 bp
Strand : +
Note : PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; ATPase AAA; KEGG: noc:Noc_0785 fis family two component transcriptional

DNA sequence : 
ATGAGTGAAAAAAACAGGATTCTACTGGTAGATGATGATCGCGATCTGCTGCGATTATTATCAATGCGTTTGGCTGGACG
TGGTTACGAAACTGTAGTCGCGGAAAGCGGGGAAGAGGCGTTGGCTCAGGTGGAGTTGGCCCGCCCCCAAGCGGTAATCA
CCGATTTGCGAATGGAAGGAATGGATGGGATGGTGTTGGCGGACTGCATTCACCGCAAAAACCCAGCATTGCCGGTGATT
ATTTTGACCGCCCATGGTTCGATCCCCGATGCAGTGCATGCGACTAAAAATGGAGTCTTCGCTTTTCTGACTAAACCCTT
CAATAGCCGGGAACTCTTGGCCCAAGTGGAGAAGGCGCTTCAGATTTCGGGTACCCACTACGCTTCGGAGAAAGAGCCGA
CAGAGAGTTGGCGCGAGGAGATCATCACCCGCAGCTCACTGATGGAGGATTTACTGAGTCAGGCTCGGCTAGTTGCCGAA
AGCGATGCCAGCATTTGCCTGCGAGGTGACAGCGGGACGGGCAAGGAGTTACTGGCCAAAGCTATCCATAAGGCCAGCTC
CCGGAATGAACAACCTTTTATTGCCGTTAACTGTGCGGCCATTCCAGAGTTGCTGCTGGAATCTGAGTTATTCGGCCATG
CTAAAGGTGCGTTTACTGGCGCAACCCGGGATTATCCAGGACTATTTCAGGCCGCCCATGGGGGTACCTTGTTTCTGGAT
GAAATCGGGGATATGCCTTTTTCTCTCCAGGTAAAATTGCTACGGGCTTTGCAGGAGCAACAAGTACGGCCTGTGGGGAG
TACCTCCACTGTCATGGTGGATGTGCGTATTATCTCGGCCACCCACAGAGATTTGGATGCAGAAGTACGTGATGGCAATT
TTCGGGAAGATCTCTATTATCGGCTTAATGTGGTGGTATTGGAGATTCCACCCCTCGCCGAGCGGCGAGAAGATATCCTT
CCCCTTGCCAGCCATTTTCTATCCACTATTGGGAATGGAATCAAGAAAAATGTTCGGGGGTTTTCCGGCGAAGCCATAGA
GTTGTTGGTGAGTGCTCCTTGGCCGGGCAATGTACGCCAGCTCCATAATGTTGTGGAACAAACCGTCGCTTTGTCCACCA
CCCCCATTATTTCCGCTAAACTGGTCAAAAAAGCACTGCGGCAGCAGTCAGGCCAATTTCCTTCCTTTGCAGAAGCCCGG
AGGCAGTTTGAGCAGGAATATCTGGCGGGCCTACTCAAAATCACCAATGGCAATGTGACTCAGGCGGCCCGTCTGGCCCA
GCGTAATCGCACCGATTTTTATAAGCTTTTGCAACGTCATAACTTGGATCCTTCCGCATTTAAGCCTGTGAAGCGGCAGT
AA

Protein sequence : 
MSEKNRILLVDDDRDLLRLLSMRLAGRGYETVVAESGEEALAQVELARPQAVITDLRMEGMDGMVLADCIHRKNPALPVI
ILTAHGSIPDAVHATKNGVFAFLTKPFNSRELLAQVEKALQISGTHYASEKEPTESWREEIITRSSLMEDLLSQARLVAE
SDASICLRGDSGTGKELLAKAIHKASSRNEQPFIAVNCAAIPELLLESELFGHAKGAFTGATRDYPGLFQAAHGGTLFLD
EIGDMPFSLQVKLLRALQEQQVRPVGSTSTVMVDVRIISATHRDLDAEVRDGNFREDLYYRLNVVVLEIPPLAERREDIL
PLASHFLSTIGNGIKKNVRGFSGEAIELLVSAPWPGNVRQLHNVVEQTVALSTTPIISAKLVKKALRQQSGQFPSFAEAR
RQFEQEYLAGLLKITNGNVTQAARLAQRNRTDFYKLLQRHNLDPSAFKPVKRQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 3e-61 43
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 3e-61 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Nhal_2229 YP_003527707.1 Fis family transcriptional regulator BAC0467 Protein 7e-78 50
Nhal_2229 YP_003527707.1 Fis family transcriptional regulator BAC0089 Protein 5e-76 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Nhal_2229 YP_003527707.1 Fis family transcriptional regulator VFG1214 Protein 5e-65 47
Nhal_2229 YP_003527707.1 Fis family transcriptional regulator VFG1249 Protein 5e-63 45
Nhal_2229 YP_003527707.1 Fis family transcriptional regulator VFG0116 Protein 1e-56 45