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Name : Nhal_1871 (Nhal_1871) Accession : YP_003527373.1 Strain : Nitrosococcus halophilus Nc 4 Genome accession: NC_013960 Putative virulence/resistance : Virulence Product : DNA mismatch repair protein MutS Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0249 EC number : - Position : 1920653 - 1923397 bp Length : 2745 bp Strand : + Note : KEGG: glo:Glov_1145 DNA mismatch repair protein MutS; TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS IV domain protein; MutS III domain protein; SMART: DNA mismatch repair pro DNA sequence : ATGGAAAAATGCTTATTATCGAGCGATTGGACCCTTTTAGGGGTCTATGTCAGACTAAAAGTGTTAACTTTCTTTACGGT GAAAGCGGTGGAGCAAGGCAAAGGCAGGAGAAATACTCAAGCGGTGCAGCAACCCCCTGAAACCGACATGATGGCCCAGT ATCGTGGGATCAAAGCGCAATATCAGGACGCATTGCTGTTCTTTCGCTTTGGTGATTTCTACGAGATGTTTTATGAGGAT GCGGCGCTGGCTTCGCGGGAATTGGATATCGTCCTGACTTCGCGGCCCCAAGCAAAAAATAGCGAGCGGGTACCCATGTG TGGGGTGCCTTACCACCGTTTGGAAACCTATGTGGCCCGCCTGATCGGAAAGGGCCATAAAGTCGCTATCTGTGAGCAGC TAGAGGGAGCCAGCAAAGGCAGGGGGTTGATCCAGCGGGAAGTGATCCGGGTGGTGACGCCGGGCACCTTCTTTGAGGCC GAGCGTCAAGAGGGGGCCTTGGCGGCGCTGTGCTTTGAAGGGGAGCAGATAGGGATGGCGTTGCTGCAACTCGCCACGGG TGAGTTTCTCTTATTGGAGGCCAGCCGGGAAGAGTTGCCGGGGGTATTGAGCCGGTTTCGGCCCCAGGAAATTCTTCTCC AAGAGGGGCAGAGGCTAGAAGCATTGCCCCACTATCAGCCCTTTATTGCCGAGCAACCCGCCGAGGCCTTTATTCCAGAA CAGGCATTGACTCTTTTAGCTGACCATTTTGGCCGTGAGGCCATTGCTTCTCTAGTGCCTACTGCACGGCAGGGGCTGGT GGCCGCGGGGGTGTTGCTGGGTTACGTAAAAGAAACTCAAATGGGTTTCTTGCCCCATCTGCAAGTCCCCAAACAGGAGA GCCGGGATCAGTTTGTCTTTTTGGATGCTCAAACCCAAAGAAACTTGGAGTTGGTGGAAAACATTTACCAAGGCACGGAG GAAGGCACCCTGTTGGCTGTTCTGGATCGCGCCCGCACCAGCATGGGACGGCGGCGTCTCAAACGGTGGCTGCTCCACCC CTTGCGGGCAGTCACTCCAATTCAGGAGCGCCAAGATGCGGTGGCTGAGCTGGTGTTAAAACATTCCCTGCGAACTAGGC TGCAAGAGGCCTTAGCCCAAGTCCTGGATTTGGAACGGCTGACTTCACGGATCACCTCGGCAGTGGCCAATCCCCGGGAT CTGGTGGCCCTGAGAACTTCATTGGCACCGTTGCCTCTCATCCATGACCTGCTAAGTGCTACTCCCATCCCGTTGCTTCA CGGTCTGGGTAGCCAGCTGGATGTTTTGGAGGATCTTCACGCTGAGATCCAGCGGGTCCTGGTGGACGAGCCCAGGGTAA CAGTGAAAGAGGGCGGACTGATTCGCCCTGGAGTGTGTGCCGAGTTGGATGAGCTCCATGCGGTGGGGCAGGAGGGAACG GGCTGGCTGGCCAATTATGAGCAACAGGAGCGAGATCGCACCCAGATCGGGAACCTTAAAGTGGGGTTCAACAAAGTCTT TGGTTACTATATTGAAATCACCAAGTCCAATCTGGGCGCGGTTCCTTTGGACTATCAGCGCCGCCAGACCTTGGCCAATG CAGAGCGCTTTATTACCGATCCGCTCAAGGCATTTGAGCAGCAAACCTTACTGGCCCTGGAGCGGGCCAAAGAATTGGAA TATCAGCGCTTTGTGGAACTGCGGGATCAGGTGGCCACCCAGGCTGCCCGCTTACGTCAAACCGCTGAAGTTTTAGGCAC CTTGGACGGATTGGCCTCCTTAGGGGAGGTGGCCGCCAGCCAAGGCTGGGTGAAACCAGAAGTGAGCGAAGGCCATCACC TGACGATTACGGAGGGCCGTCATCCGGTGGTGGAGTCCTTGAGAGGAGAATTTGTGCCCAATGATCTCCATTTGGGCCAA GACCCTTCTTTTCTCATTTTGACCGGCCCCAATGCGGCGGGTAAGAGCACCTATGCCCGCCAGGCGGCTATTTTGGTGTT GTTAGCCCAAATAGGGAGTTTTGTCCCAGCGGAAACTGCCCATATTGGCGTGGTGGACCGTATCTTCACCCGCGTTGGGG CAGCGGACTTCCTGGCCCGGGGGCTGTCTACCTTTATGATGGAAATGATGGAAACCGCCAATATTCTCCGCTATGCCACC TCTAAAAGCCTGGTGATCCTGGATGAAGTGGGGCGGGGTACCGGCACCTCCGATGGGCAAGCCATTGCCCAGGCGGTGGC GGAAATGTTGGCCCAGGAAATCAAAGCCAGAACCTTATTTACCACCCATTATCATCAATTGGCGGCGTTGGCGGATCGCA TTCCCAGCATGGCCAATGCCCGCCTGGCAGTCCGGGAAGAGCAAGAGGAAGTTTCTTTTCTCTATAAAGTGGTTCCTGGC GCGGCCCCTAAGAGTTATGGCATTTATGTGGCCAAGTTGGCAGGCTTGCCCCCTGCTGTGGTTCAGCGGGCCAGTGAACT ATTGGCCCAACTGGAGCAGGAAGAAAGCGTTTCTCCCGTTGGCAACGCCAGGGCGGAGGTTAGGGAAGTTCCCCCTCCTT CCGGCTGGCTTAGACGGGAGGCTTTAGTGGCTCGCTTGTTGGAGCTGGATCCTCTGCGCACGACCCCTTTGGAGGCCTTG GAACTGTTGGCGGAGCTCAGGCATTTAGCCCAGTCCTCTTCCCGCTCAGAAGGCTGGGAGGCTGCCCCGGTCATGCCCTT TTCCAAGCAGTCCGGTAAAGGATGA Protein sequence : MEKCLLSSDWTLLGVYVRLKVLTFFTVKAVEQGKGRRNTQAVQQPPETDMMAQYRGIKAQYQDALLFFRFGDFYEMFYED AALASRELDIVLTSRPQAKNSERVPMCGVPYHRLETYVARLIGKGHKVAICEQLEGASKGRGLIQREVIRVVTPGTFFEA ERQEGALAALCFEGEQIGMALLQLATGEFLLLEASREELPGVLSRFRPQEILLQEGQRLEALPHYQPFIAEQPAEAFIPE QALTLLADHFGREAIASLVPTARQGLVAAGVLLGYVKETQMGFLPHLQVPKQESRDQFVFLDAQTQRNLELVENIYQGTE EGTLLAVLDRARTSMGRRRLKRWLLHPLRAVTPIQERQDAVAELVLKHSLRTRLQEALAQVLDLERLTSRITSAVANPRD LVALRTSLAPLPLIHDLLSATPIPLLHGLGSQLDVLEDLHAEIQRVLVDEPRVTVKEGGLIRPGVCAELDELHAVGQEGT GWLANYEQQERDRTQIGNLKVGFNKVFGYYIEITKSNLGAVPLDYQRRQTLANAERFITDPLKAFEQQTLLALERAKELE YQRFVELRDQVATQAARLRQTAEVLGTLDGLASLGEVAASQGWVKPEVSEGHHLTITEGRHPVVESLRGEFVPNDLHLGQ DPSFLILTGPNAAGKSTYARQAAILVLLAQIGSFVPAETAHIGVVDRIFTRVGAADFLARGLSTFMMEMMETANILRYAT SKSLVILDEVGRGTGTSDGQAIAQAVAEMLAQEIKARTLFTTHYHQLAALADRIPSMANARLAVREEQEEVSFLYKVVPG AAPKSYGIYVAKLAGLPPAVVQRASELLAQLEQEESVSPVGNARAEVREVPPPSGWLRREALVARLLELDPLRTTPLEAL ELLAELRHLAQSSSRSEGWEAAPVMPFSKQSGKG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| mutS | AAA80578.1 | DNA mismatch repair protein | Virulence | SPI-1 | Protein | 2e-124 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Nhal_1871 | YP_003527373.1 | DNA mismatch repair protein MutS | VFG0562 | Protein | 2e-139 | 44 |
