Gene Information

Name : Nhal_1409 (Nhal_1409)
Accession : YP_003526947.1
Strain : Nitrosococcus halophilus Nc 4
Genome accession: NC_013960
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1429611 - 1430300 bp
Length : 690 bp
Strand : -
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: noc:Noc_1273 ABC transporter ATPase

DNA sequence :
ATGACGGCAGTATTAGAACTCCTTAACCTTAGCAAATCTTACTGGGAAGGCGAGACTGAGCATCGGGTACTCCATGGGCT
CACCGCCACTGTGCAAAAGGGTGAATGCGTGGTTCTGCTTGGGCGCAGCGGCTCGGGTAAATCCACCCTCCTCAACCTCA
TTGCGGGTATCGATTTTCCCAGCACCGGTGAAGTGAAAATTAATGGGATATCCCTGACTCAACTCTCCGAGGAAGATCGG
ACCTTGCTGCGCCGGCGCCATATTGGGTTTGTCTTTCAATTCTTCAATCTCATTCCCACCCTCACCGTAGAAGAAAATCT
GCTGCTGCCACTCGAGCTTAACGGCCGCAATAGTCCCGCTGAGCGCGCTCACGCCCGAAATTTGCTCCAGGAAGTGGGTC
TCCTAGAGCGGGCCCAGAGCTCTCCGGATGAACTCTCCGGTGGCGAGCAACAGCGGGTGGCCATCGCCCGAGCCCTGGTC
CACGATCCCTTGCTCATACTGGCTGATGAACCCACGGGAAATCTGGATCTGGAAACCGGACAACGGGTTTTATCCCTCTT
AGACCGTCTCACCAAACAAGCCGGCAAAACCCTCATCATGGTCACCCATAGCCCAGAAGTGATCGGGCAAGCGGATCGCA
TTCTGCGGTTGCGCAGCGGGGGATTGGTGGCCGAGGAGTTCCCCCAATGA

Protein sequence :
MTAVLELLNLSKSYWEGETEHRVLHGLTATVQKGECVVLLGRSGSGKSTLLNLIAGIDFPSTGEVKINGISLTQLSEEDR
TLLRRRHIGFVFQFFNLIPTLTVEENLLLPLELNGRNSPAERAHARNLLQEVGLLERAQSSPDELSGGEQQRVAIARALV
HDPLLILADEPTGNLDLETGQRVLSLLDRLTKQAGKTLIMVTHSPEVIGQADRILRLRSGGLVAEEFPQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-30 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-27 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-28 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-28 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Nhal_1409 YP_003526947.1 ABC transporter NC_008702.1.4606598. Protein 1e-29 46
Nhal_1409 YP_003526947.1 ABC transporter NC_012469.1.7686878. Protein 2e-35 45
Nhal_1409 YP_003526947.1 ABC transporter CP001581.1.gene598.p Protein 6e-34 44
Nhal_1409 YP_003526947.1 ABC transporter CP001581.1.gene798.p Protein 1e-33 44
Nhal_1409 YP_003526947.1 ABC transporter NC_012469.1.7685735. Protein 3e-34 42
Nhal_1409 YP_003526947.1 ABC transporter NC_012469.1.7686946. Protein 5e-20 41