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Name : Slit_0498 (Slit_0498) Accession : YP_003523125.1 Strain : Sideroxydans lithotrophicus ES-1 Genome accession: NC_013959 Putative virulence/resistance : Virulence Product : general secretory pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 504999 - 506489 bp Length : 1491 bp Strand : - Note : TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; KEGG: nmu:Nmul_A1903 type II secretion system protein E; SMART: AAA ATPase DNA sequence : GTGAGCCAGACCGCGATCAATCGCCGCGCTGCGCGCCGCCTGCCCTACACCTTCGCCAGGACGCAAGGCGTGGTGCTGAC CGATTGCGATGAACGCGCGGTACTTGCCGTGCGCCGCGATGCGAAGCCGGAAGCCATTGCCGAAGTGATGCGCCAGCTCG CGTTGCCGCTCGACGCCACGCTGGTCGATACGGAAGAGTTCGAGCGCATCCTGAGCGGTGCCTATTCGCAGGCCGATGAA TCCACCGCCACGCTGCTCGACGATGCCGAGCAGGACATGGACCTGTCCATGCTGCTGCACGACCTGCCCAGATCCGCCGA CCTGCTCGAATCGGAGAACGACGCGCCGGTCATCCGCATGATCAATGCGCTGCTGGCCCAGGCCGTGCGCGACAACGCTT CCGACATCCACATCGAGCCATTCGAGACACGCTCGGTGGTGCGCTTCCGTCTCGACGGCACCCTGAAGGATATCGCCGAG CCGCACCGCGCACTGCATGCCGCGTTGGTGTCGCGCATCAAGGTCATGGCCGATCTCGACATCGCCGAAAAGCGCCTGCC GCAGGACGGCCGCATCGCCTTGCGTCTGGCAGGTCGCCCCGTAGATGTGCGCGTCTCGACGTTGCCCACAGGGCATGGCG AGCGCGTAGTCATGAGGCTCCTCGACAAGGAAGCGGGACGCCTCGACCTCACCAGACTAGGCATGAGTGCGGCCGCTCTT GAAGCCATGATGCGGCTCACCAACCAGCCGCACGGCATCGTGCTGGTCACCGGGCCGACCGGTTCAGGCAAGACCACTAC CCTGTATGCGGCGTTGTCGTGCATCGACGCGACCGTCACCAACGTGATGACGGTGGAAGACCCGGTGGAATACGACCTCG ACGGCATCAGCCAGACCCAGGTGAACCCGCGCATCGACATGAGCTTTGCGCGAGCCCTGCGCGCCATCCTGCGCCAGGAC CCGGACGTGATCATGATCGGCGAGATCCGCGACCTCGAGACCGCGCAGATCGCAGTGCAGTCCAGCCTCACCGGCCACCT GGTACTCGCCACGTTGCACACCAACGATACCGTCAGTGCCGTCACCCGCCTCACCGACATGGGCGTGGAACCCTTCCTGC TCTCTTCCAGCATCGTCGGCGTGCTAGCGCAACGGCTGGTGCGCCGCCTGTGCCCGGATTGTCGCGAGGCTTATGCACCG GACGAAGCGGAACTGGCGTTGCTCGCACGCTACGGTAAGCCGACAGTGATCTACCGCCCGGCCGGCTGCGCCAATTGCAA CCAGACCGGCTATCGCGGCCGCACCGGCATCTATGAGTTGCTGGAAGTGGATGACTCGCTGCGCAGCATGATCCACTCGC GCGCAAGCGAGCAGCACTTGCGCGACTATGCGATGAAGAATGGGATGCTGAACCTGCGTGACGATGGCATGCGCTGGGTG GTTTCGGGGGATACCTCGCTGGAAGAAGTGATCCGCGTGACGCGGGATTGA Protein sequence : MSQTAINRRAARRLPYTFARTQGVVLTDCDERAVLAVRRDAKPEAIAEVMRQLALPLDATLVDTEEFERILSGAYSQADE STATLLDDAEQDMDLSMLLHDLPRSADLLESENDAPVIRMINALLAQAVRDNASDIHIEPFETRSVVRFRLDGTLKDIAE PHRALHAALVSRIKVMADLDIAEKRLPQDGRIALRLAGRPVDVRVSTLPTGHGERVVMRLLDKEAGRLDLTRLGMSAAAL EAMMRLTNQPHGIVLVTGPTGSGKTTTLYAALSCIDATVTNVMTVEDPVEYDLDGISQTQVNPRIDMSFARALRAILRQD PDVIMIGEIRDLETAQIAVQSSLTGHLVLATLHTNDTVSAVTRLTDMGVEPFLLSSSIVGVLAQRLVRRLCPDCREAYAP DEAELALLARYGKPTVIYRPAGCANCNQTGYRGRTGIYELLEVDDSLRSMIHSRASEQHLRDYAMKNGMLNLRDDGMRWV VSGDTSLEEVIRVTRD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-124 | 54 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-124 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Slit_0498 | YP_003523125.1 | general secretory pathway protein E | VFG0182 | Protein | 2e-131 | 57 |
| Slit_0498 | YP_003523125.1 | general secretory pathway protein E | VFG1876 | Protein | 3e-132 | 54 |
| Slit_0498 | YP_003523125.1 | general secretory pathway protein E | VFG2048 | Protein | 2e-124 | 54 |
| Slit_0498 | YP_003523125.1 | general secretory pathway protein E | VFG2426 | Protein | 2e-77 | 47 |
| Slit_0498 | YP_003523125.1 | general secretory pathway protein E | VFG0233 | Protein | 2e-86 | 45 |
| Slit_0498 | YP_003523125.1 | general secretory pathway protein E | VFG0112 | Protein | 1e-87 | 41 |
