Gene Information

Name : Slit_0377 (Slit_0377)
Accession : YP_003523006.1
Strain : Sideroxydans lithotrophicus ES-1
Genome accession: NC_013959
Putative virulence/resistance : Unknown
Product : integron integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 388272 - 389264 bp
Length : 993 bp
Strand : -
Note : KEGG: neu:NE2189 integron integrase; TIGRFAM: integron integrase; PFAM: integrase family protein

DNA sequence : 
ATGGTTAACGAAACTACACCGCCTGCACCAACTCCTCCAAAATTGCTCGATCAAGTCCGTGACAAGATCAGGGTGAAGCA
TTACAGCATCCGCACCGAAACGCAATATGTGCAGTGGATCAAACGTTTCATTCTGTTTCACGGCAAGCGTCATCCGAAAG
ACATGGGCGCCGCTGAAGTGGAGGCTTTTTTAACGCATCTTGCGGTCGAGGGTAATGTCTCGGCCTCTACACAAAATCAG
GCTTTGTCTGCGCTGTTGTTTCTTTACCGCGAGGTGCTCGGGATGGAGTTGCCCTGGCTGGATGATGTGGTGCGGGCGAA
GAAGCCGCAACGCTTGCCGTCGGTGTTGAATCGCGAAGAGGTGTCATTGGTGCTGGAGCGCATGGAAGGTACGTATGGTT
TGATGGCCCGGTTGCTCTATGGAACAGGCATGCGACTGATGGAATGCTGTCGATTGCGGGTGAAGGATATTGATTTTCGG
CAGCGCGAGATATTGATCCGCGATGGCAAGGGCGCGAAGGATCGTGTAACGATGTTGCCAGAAACGCTTATCAAGCCTTT
GCAGGAGTATCTGCTCAAGCGCCGCCGCTTGTTCGAGGATGATTTGAGCAAAGGGATGACGGAGGTGTATCTGCCTGACG
CACTGGCCCGCAAATATCCCAACGCTGCCCAGGAGTGGATTTGGCAATATGTCTTTCCTTCCGGCAGCTATTCGGTCGAT
CCGCGCAGCGGGCGCGAACGTCGCCACCATATCGATGAGAAGCTGCTGCAACGCGCGATGAAGAAAGCGGTGACGGCTTC
CGGCATAACCAAGTTTGCTACCCCGCACACCTTGCGCCATTCCTTCGCCACGCATTTGCTGGAGGGTGGCTACGATATCC
GCACCGTGCAAGAACTGCTCGGCCATTCCGATGTTTCGACCACGATGATCTACACGCATGTGCTGAACAAGGGCGGACGC
GGTGTAACGAGTCCGCTGGACAAGATGCACTAG

Protein sequence : 
MVNETTPPAPTPPKLLDQVRDKIRVKHYSIRTETQYVQWIKRFILFHGKRHPKDMGAAEVEAFLTHLAVEGNVSASTQNQ
ALSALLFLYREVLGMELPWLDDVVRAKKPQRLPSVLNREEVSLVLERMEGTYGLMARLLYGTGMRLMECCRLRVKDIDFR
QREILIRDGKGAKDRVTMLPETLIKPLQEYLLKRRRLFEDDLSKGMTEVYLPDALARKYPNAAQEWIWQYVFPSGSYSVD
PRSGRERRHHIDEKLLQRAMKKAVTASGITKFATPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHVLNKGGR
GVTSPLDKMH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 4e-64 58
int1 YP_005160012.1 integrase Not tested Not named Protein 2e-69 58
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 3e-84 58
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 5e-84 58
intI1 AAK02045.1 integrase Not tested SGI1 Protein 7e-84 58
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 3e-84 58
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 3e-84 58
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 7e-84 58
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 2e-84 58
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 3e-84 58
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 7e-84 58
intI YP_001844881.1 integrase Not tested AbaR20 Protein 4e-84 58
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 2e-84 58
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 3e-84 58
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 7e-84 58
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 4e-84 58
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 3e-84 58
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 7e-84 58
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 4e-84 58
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 3e-84 58
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 7e-84 58
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 4e-84 58
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 3e-84 58
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 7e-84 58
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 3e-84 58
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 3e-84 58
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 7e-84 58

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slit_0377 YP_003523006.1 integron integrase VFG1028 Protein 3e-84 58