Gene Information

Name : Slit_2633 (Slit_2633)
Accession : YP_003525245.1
Strain : Sideroxydans lithotrophicus ES-1
Genome accession: NC_013959
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2676735 - 2678096 bp
Length : 1362 bp
Strand : -
Note : KEGG: app:CAP2UW1_0768 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATP

DNA sequence : 
ATGACTCTTAGAATAGTAAATGTCCCTCGCGTACTGGTTGTGGATGATGAGGCGGATATATTGGAATTGCTGGAGTTGGC
TCTGGTGCGTATGGGTCTGGAGGTTGTGCGTGCAAGCAATGTAAGGCAAGCCAAAGAATGCTTGGACAGCGGAAGTTTCG
ATCTTTGTCTCACTGATATGCGGATGCCAGACGGAGAAGGGCTGGAGGTTGTTCGTTATATCTCCGAGCGTGGTTTGGAT
GTGCCGGTGGCCGTGATCACTGCCCATGGCAATCTCGAAAATGCAGTAGCTGTTCTCAAGGCGGGGGCATTTGATTATCT
TTCCAAGCCGGTAGCATTGGATCAGTTGCGCACGCTGGTCACATCTGCGCTCAGATTGCCTGCGTCCAATGTCGCGATAA
AGGAGGGGGAAAACACTTTGCTGGGGAGTTCTCCAGCCATGGTGCAGGCACGCGAGCTGATTGGGCGCGTGGCGCGCAGT
CAGGCGCCGGTTCATATTAGCGGTGAATCCGGCAGCGGCAAGGAATTGGCCGCATGTTTGATTGTTGAGAAGAGTGCGCG
TCGCGATCAGCCGTTTATTGCAGTGAACTGCGGGGCGATTCCCGAGAATTTGATGGAAAGCGAGTTTTTTGGCTATCGCA
AAGGGGCGTTTACCGGTGCGGACAAGGACAAGGAGGGGTTCTTTCAGGCTGCGAATCAGGGCACGTTGTTTCTGGACGAA
GTGGCAGATCTGCCGATGATGATGCAGGTCAAATTATTACGAGCAATCCAGGAAAAGAAAGTGCGCCGCATCGGTGCAAC
TCAGGAAGAGCCGGTGGATGTTCGAATTCTCAGTGCCACCCACCATGATTTGGCTAAATGCGTCCAGCAAGGTGAGTTCA
GGCAAGATCTGTACTATCGCTTGAATGTCATTTCATTGCAGATGCCGTCTTTGCGGGAGATGCGCGAGGATATACCGGAG
ATTGCATGCCGAATATTGGAGCGGTTGCGAGGAAGCTCGAATGCCAAATTTTCAGCGCAGGCATTGAATGAGCTTGCGCG
ATACGATTTCCCCGGAAATGTGCGCGAGTTGGAGAATGTTATCGAACGAGCATTGGCGTTGTGCCAGAACGATGTCATTA
CACCCGCAGACTTGCAGTTGATGCCAGTGCAGTCGGCGCAAGTGGAGGATAGGAGTGAGGGGGCTGGCAAGTATCCGCTT
ACCGACTATCTGGATCGAATCGAACGCGAAATCATTCTGGAAGCGCTGCATCAGACCCATTTTAACCGTACATCTGCAGC
CAAAATACTGGGAGTGACGTTTCGTGCATTGCGTTACCGCATGGAACGGCTATCCATTACCGACAAGGATAAAGTCGATT
GA

Protein sequence : 
MTLRIVNVPRVLVVDDEADILELLELALVRMGLEVVRASNVRQAKECLDSGSFDLCLTDMRMPDGEGLEVVRYISERGLD
VPVAVITAHGNLENAVAVLKAGAFDYLSKPVALDQLRTLVTSALRLPASNVAIKEGENTLLGSSPAMVQARELIGRVARS
QAPVHISGESGSGKELAACLIVEKSARRDQPFIAVNCGAIPENLMESEFFGYRKGAFTGADKDKEGFFQAANQGTLFLDE
VADLPMMMQVKLLRAIQEKKVRRIGATQEEPVDVRILSATHHDLAKCVQQGEFRQDLYYRLNVISLQMPSLREMREDIPE
IACRILERLRGSSNAKFSAQALNELARYDFPGNVRELENVIERALALCQNDVITPADLQLMPVQSAQVEDRSEGAGKYPL
TDYLDRIEREIILEALHQTHFNRTSAAKILGVTFRALRYRMERLSITDKDKVD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 3e-84 44
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 3e-84 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slit_2633 YP_003525245.1 Fis family transcriptional regulator BAC0467 Protein 2e-75 45
Slit_2633 YP_003525245.1 Fis family transcriptional regulator BAC0089 Protein 1e-63 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slit_2633 YP_003525245.1 Fis family transcriptional regulator VFG1214 Protein 7e-117 59
Slit_2633 YP_003525245.1 Fis family transcriptional regulator VFG0116 Protein 5e-56 43