Gene Information

Name : Slit_2079 (Slit_2079)
Accession : YP_003524694.1
Strain : Sideroxydans lithotrophicus ES-1
Genome accession: NC_013959
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2098141 - 2098821 bp
Length : 681 bp
Strand : -
Note : KEGG: nmu:Nmul_A0951 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGATCGAACTGCAAAACGTCTGCCGCACCTTCATCGTCGGCGACCAGCAAGTCGCCGCATTGCGCGACATCAACCTGCG
CCTCGATGCGGGTGAATACATTTCCATCATGGGGCCGTCCGGTTCGGGTAAATCCACCATGCTCAACATGCTTGGCCTGC
TTGACCGGCCGACATCCGGCACCTACCTGCTGGATGGCGGCAACGTCAGCGACCTGAACGACGAGCAGCAGGCACGCGTA
CGCCGCGAAAAGATCGGCTTCGTGTTCCAGTCCTTCCACCTTGTCCCTCGACTAACCGCAGCACAGAACGTCGAATTGCC
GATGATCCTCGCGGGTATTCCGTCCGAAGAGCGCAGAGCGCGCGTGCAAGTGCTGATGCAAAACTATGGATTGTCAGAAC
GCGCCGATCACCGACCAGATCAGCTTTCCGGCGGCCAGCGCCAGCGTGTGGCCATCGCCCGCGCCACCGTGATGAACCCC
ACGGTGCTGCTGGCCGATGAACCGACCGGCAATCTGGATCGGAGTACCGGCTGGGAAGTTTTGAAATTGCTGGAAGGTTT
GATGGAGCAGGGCATCACGCTGGTGGTGGTGACGCACGATGCCGAGATCGGTGCAAGATCCAGGCGCCAGATACACATGC
TGGATGGCCGCATCGTTTCCGATGTACAACACGCAAAATGA

Protein sequence : 
MIELQNVCRTFIVGDQQVAALRDINLRLDAGEYISIMGPSGSGKSTMLNMLGLLDRPTSGTYLLDGGNVSDLNDEQQARV
RREKIGFVFQSFHLVPRLTAAQNVELPMILAGIPSEERRARVQVLMQNYGLSERADHRPDQLSGGQRQRVAIARATVMNP
TVLLADEPTGNLDRSTGWEVLKLLEGLMEQGITLVVVTHDAEIGARSRRQIHMLDGRIVSDVQHAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-36 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-36 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-36 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-36 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slit_2079 YP_003524694.1 ABC transporter NC_008702.1.4606598. Protein 4e-64 62
Slit_2079 YP_003524694.1 ABC transporter NC_012469.1.7686878. Protein 6e-55 51
Slit_2079 YP_003524694.1 ABC transporter NC_012469.1.7685735. Protein 8e-38 43
Slit_2079 YP_003524694.1 ABC transporter CP001581.1.gene798.p Protein 2e-37 42
Slit_2079 YP_003524694.1 ABC transporter CP001581.1.gene598.p Protein 2e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slit_2079 YP_003524694.1 ABC transporter VFG2059 Protein 1e-16 41