Gene Information

Name : Slit_1489 (Slit_1489)
Accession : YP_003524113.1
Strain : Sideroxydans lithotrophicus ES-1
Genome accession: NC_013959
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1501221 - 1501949 bp
Length : 729 bp
Strand : +
Note : KEGG: sdl:Sdel_1725 ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGAACAGCGATCCCGTCATTCGTATCGAGCGGCTATACAAGGAGTACGTGACCGAAGCGGGCACGGTGCCGGTGCTCAA
GGATGTTTCTGTCTCGGTGATGCCGGGGGAATTCGTCGCCATCATGGGGCCGTCGGGTTCGGGTAAATCCACGTTCATGA
ATATCCTCGGCTGCCTCGATGTGGCGACCAGCGGCAACTATTTTCTCAACGGCCGCGATGTGAACGCGCAGAGCCGCGAT
GAACTGGCGTTGTTGCGCAATCAGGTGATCGGCTTCGTGTTCCAGGGATTCAATCTGTTGCCACGCGCAAGTCTGGAGGA
TAACGTCGCATTGCCGTTGATCTATCGCGGTACACCGACCGCGACCCGTTTGGCACGTGCCAGCGAAATGCTGGAGAAGG
TCGGGCTCGGGCAATACCGGCGCTCACGTCCCAATCAGATATCGGGCGGGCAGCAGCAGCGCGTTGCCATCGCGCGCGCG
CTGGTCAACCATCCCAAGCTGCTGCTGGCAGACGAACCGACCGGCAATCTCGATACGCATACCAGTCAGGAGATCATGGC
GCTGTTCACCGAACTGAACCAGCGCGATGGCATCACGATCGTCCTCATCACGCACGAATCGGACATCGCCACTTATGCGC
AGCGGCTGGTGCGACTCTCCGATGGCCGCATCGTGTATGACGGGGCGATCGAGCATGCCGCCCCGCACCATCTGGAGGCG
ACCTCGTGA

Protein sequence : 
MNSDPVIRIERLYKEYVTEAGTVPVLKDVSVSVMPGEFVAIMGPSGSGKSTFMNILGCLDVATSGNYFLNGRDVNAQSRD
ELALLRNQVIGFVFQGFNLLPRASLEDNVALPLIYRGTPTATRLARASEMLEKVGLGQYRRSRPNQISGGQQQRVAIARA
LVNHPKLLLADEPTGNLDTHTSQEIMALFTELNQRDGITIVLITHESDIATYAQRLVRLSDGRIVYDGAIEHAAPHHLEA
TS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 6e-30 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-30 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-30 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-30 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-29 41
unnamed ABA47263.1 ABC transporter Not tested S-PAI Protein 2e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slit_1489 YP_003524113.1 ABC transporter NC_012469.1.7686878. Protein 2e-50 50
Slit_1489 YP_003524113.1 ABC transporter NC_008702.1.4606598. Protein 6e-39 49
Slit_1489 YP_003524113.1 ABC transporter CP001581.1.gene798.p Protein 8e-39 47