Gene Information

Name : Slit_1013 (Slit_1013)
Accession : YP_003523638.1
Strain : Sideroxydans lithotrophicus ES-1
Genome accession: NC_013959
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 990408 - 991076 bp
Length : 669 bp
Strand : -
Note : KEGG: rpi:Rpic_0575 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein

DNA sequence : 
ATGCGTATATTGGTGATAGAAGACGATGCCCTGCTGGGCGATGCGATCCAGGCCGGACTGAAACAGTCCGGCTATGCCGT
GGACTGGATGAAGGATGGCGTGTCGGCCGACCAAGCGCTCAGCACCGAAGCATATGCCGCTGCAGTCCTGGACCTGGGGC
TGCCCCGCATGTCCGGCCTGGAAGTGCTGCAGCGTCTGCGCAGCCGCAACACGCCGATACCGGTACTGATCCTGACCGCG
ATGGATACGGTGGAGGACCGCATCAAGGGGCTGGATGCCGGCGCAGACGACTATCTGGTCAAACCGTTCGACATGGGAGA
ACTGGCAGCACGCTTGCGCGCACTGATCCGCCGCGCCAGCGGCAAGCCTGCGCCTGCATTGCAGGTTGCCGGCGTGGAGA
TGGAACCGGCAGCGCACCGTGTGCTGTACCGCAACAGCGCGATCGAGCTTCCCGCCAAGGAATTCGCCGTGCTGCATGCC
CTGATGCTTAACGCCGGGCGAGTGTTGTCTCGCACCCAGATCGAAGAGCAGCTCTATGCCTGGGGCGAAGAAGTCGAAAG
CAACGCGGTCGAAGTGTATATCCACCATCTGCGCCGCAAACTGTTCCCTGAATTGATCGAGACCATCCGTGGCGTAGGCT
ATCTGATACCCAATGACAAAAATGTCTGA

Protein sequence : 
MRILVIEDDALLGDAIQAGLKQSGYAVDWMKDGVSADQALSTEAYAAAVLDLGLPRMSGLEVLQRLRSRNTPIPVLILTA
MDTVEDRIKGLDAGADDYLVKPFDMGELAARLRALIRRASGKPAPALQVAGVEMEPAAHRVLYRNSAIELPAKEFAVLHA
LMLNAGRVLSRTQIEEQLYAWGEEVESNAVEVYIHHLRRKLFPELIETIRGVGYLIPNDKNV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 3e-34 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slit_1013 YP_003523638.1 transcriptional regulator BAC0487 Protein 3e-35 44
Slit_1013 YP_003523638.1 transcriptional regulator BAC0083 Protein 1e-30 43
Slit_1013 YP_003523638.1 transcriptional regulator BAC0638 Protein 1e-26 42
Slit_1013 YP_003523638.1 transcriptional regulator NC_003923.1003417.p0 Protein 1e-26 41
Slit_1013 YP_003523638.1 transcriptional regulator NC_013450.8614146.p0 Protein 1e-26 41
Slit_1013 YP_003523638.1 transcriptional regulator NC_002951.3238224.p0 Protein 1e-26 41
Slit_1013 YP_003523638.1 transcriptional regulator NC_007793.3914065.p0 Protein 1e-26 41
Slit_1013 YP_003523638.1 transcriptional regulator NC_002758.1121390.p0 Protein 1e-26 41
Slit_1013 YP_003523638.1 transcriptional regulator NC_010079.5776364.p0 Protein 1e-26 41
Slit_1013 YP_003523638.1 transcriptional regulator NC_002952.2859858.p0 Protein 1e-26 41
Slit_1013 YP_003523638.1 transcriptional regulator NC_007622.3794948.p0 Protein 1e-26 41
Slit_1013 YP_003523638.1 transcriptional regulator AE015929.1.gene1106. Protein 2e-24 41
Slit_1013 YP_003523638.1 transcriptional regulator NC_002516.2.879194.p Protein 1e-25 41
Slit_1013 YP_003523638.1 transcriptional regulator BAC0288 Protein 1e-25 41
Slit_1013 YP_003523638.1 transcriptional regulator BAC0197 Protein 1e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slit_1013 YP_003523638.1 transcriptional regulator VFG0473 Protein 2e-35 43
Slit_1013 YP_003523638.1 transcriptional regulator VFG1390 Protein 9e-30 42