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Name : ldcC (PANA_0810) Accession : YP_003519105.1 Strain : Pantoea ananatis LMG 20103 Genome accession: NC_013956 Putative virulence/resistance : Virulence Product : LdcC Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : - Position : 947475 - 949664 bp Length : 2190 bp Strand : + Note : Lysine decarboxylase, constitutive; Similar to Pantoea sp. At-9b, Lysine decarboxylase (NCBI: ZP_05731579.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic DNA sequence : TTGAGTGGCATCATTCGCTATGCTTACTTAATGCCTCAACAATCAGGGAGATGTGCATTGAATATTCTGGCGATCATGGG CGCGCATGGCGTGTTTTACAAAGATGAACCCTTACGCGAACTGGAAGTCGCGCTGAGTCAGCAAGGTTTTCAACTCATCC GGCCGAAAAACAATGACGATCTGCTAAAACTCATTGAACACAATCCCCGTATCAGCGGCGTCATTTTTGACTGGGATGAA CACAACAGTCCGGAGCTGTGTGGTGAAATCAATCAGCTTAATGAATACCTGCCGCTGTATGCCTTTATCAATACCCATTC CCAGATGGATATCAGTATCAATGAAATGCGTATGCCGCTGCATTTCTTTGAATATGCTCTGAATGCCGCCGACGATATTG CTCTTCACATCCGACAGTACACAGATGACTACCTCGACAACATCACGCCGCCGTTGACCAAAGCGTTGTTTACCTATGTG AAAGAGGGGAAATACACCTTCTGTACCCCTGGCCATATGGCCGGTACGGCCTTCCAGAAAAGCCCGGTCGGCTGCTTGTT CTATGACTTTTTTGGTGCCAATACGCTGAAGTCGGATATCTCGATTTCGGTAACGGAACTGGGATCGCTGCTGGACCACA CAGGGCCGCATCTGGAAGCCGAAGAGTATATCGCCCGCACTTTTGGTGCGGAACAGAGCTACATGGTGACCAACGGCACC TCGACCTCGAATAAAATCGTCGGAATGTATGCTGCCCCGGCAGGCAGCACGATTCTGGTGGACCGCAACTGCCATAAGTC GCTCACGCATCTGTTGATGATGAGCGATTTGATCCCCATCTGGCTCAAGCCAACACGCAACGCATTGGGTATTTTGGGCG GTATTCCGCAAAAAGAGTTCACCCGTGCCAGCATCGAGCAAAAAGTGGCGGTCACGCCGCGCGCCAGTTGGCCGGTACAT GCGGTGATCACCAATTCGACCTACGACGGTTTGCTCTACAACACTCAGTACATCAAGCAAACCCTTGAGGTGCCGTCGAT CCACTTTGATTCTGCCTGGGTTCCCTATACCAACTTTCATCCCATCTATGAGGGGAAAAGCGGCATGAGCGGTGAGCGGG TGCCGGGTAAAGTCTTCTATGAAACGCAGTCCACCCATAAACTGCTGGCGGCTTTTTCCCAGGCTTCGCTGATTCATATT AAAGGCGACTATGACGAGCAGACGTTTAATGAAGCCTACATGATGCACACCACCACCTCACCGAACTATGCCATCGTCTC ATCCATTGAGACAGCGGCGGCGATGCTGCGGGGAAATCCGGGCAAAAGGCTCATTAACCGGTCAGTGGAACGCGCCCTGC ATTTCCGTCGTGAGATACAGCGGTTGCGAGAAGAGTGCGACAGCTGGTTTTTTGATATCTGGCAGCCTGAACACGTTGAT GAAGCCCAGTGCTGGCCGATACAGCCGGGGGAAGAGGACTGGCACGGATTCACCCAGGCCGATCGCGACCACATGTATCT TGATCCGATCAAGGTAACGATCCTGACACCCGGCATGAGCGAGCTGGGCGTGATGGCGGAAGAGGGCATTCCGGCGGCGC TGGTGGCGAAGTTCCTGGATGAGCGCGGCATCGTGGTTGAAAAAACCGACCCTTACAATCTGTTATTCCTGTTTAGTATC GGCATTGATAAAACCAAAGCGATGAGCGTGCTGCGAGGGTTAACGGAATTTAAGCGCGCCTACGATCTCAATCTCCGGGT CAAAAATATGTTGCCGGATCTCTATGCGGAGGATCCCGATTTTTATCGCAACATGCGTATTCAGGCGCTGGCGCAGGGGA TCCACCGTCTTATCCAGCAACATGATTTACCGCGGCTCATGTTGAAGGCGTTTGACGTGTTGCCCGAGATGAAAATGACG CCGCATCAGGCTTTTCAGCAACAGGTGAAGGGCAATATTGAAACCGTGAACATCAATGAGCTGGTGGGCCGCATCTCTGC CAACATGATCCTGCCTTATCCTCCGGGCGTTCCTCTGGTGATGCCTGGTGAAATGATCACAGAACAAAGCCGCGCCGTAC TCGACTTCCTGTTAATGCTGTGTAGCATTGGACGCCACTATCCTGGCTTTGAGACGGATATTCACGGCGCGATCCTCACC GAAGAGGGGAATATCGGGTACGTGTGCTGA Protein sequence : MSGIIRYAYLMPQQSGRCALNILAIMGAHGVFYKDEPLRELEVALSQQGFQLIRPKNNDDLLKLIEHNPRISGVIFDWDE HNSPELCGEINQLNEYLPLYAFINTHSQMDISINEMRMPLHFFEYALNAADDIALHIRQYTDDYLDNITPPLTKALFTYV KEGKYTFCTPGHMAGTAFQKSPVGCLFYDFFGANTLKSDISISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTNGT STSNKIVGMYAAPAGSTILVDRNCHKSLTHLLMMSDLIPIWLKPTRNALGILGGIPQKEFTRASIEQKVAVTPRASWPVH AVITNSTYDGLLYNTQYIKQTLEVPSIHFDSAWVPYTNFHPIYEGKSGMSGERVPGKVFYETQSTHKLLAAFSQASLIHI KGDYDEQTFNEAYMMHTTTSPNYAIVSSIETAAAMLRGNPGKRLINRSVERALHFRREIQRLREECDSWFFDIWQPEHVD EAQCWPIQPGEEDWHGFTQADRDHMYLDPIKVTILTPGMSELGVMAEEGIPAALVAKFLDERGIVVEKTDPYNLLFLFSI GIDKTKAMSVLRGLTEFKRAYDLNLRVKNMLPDLYAEDPDFYRNMRIQALAQGIHRLIQQHDLPRLMLKAFDVLPEMKMT PHQAFQQQVKGNIETVNINELVGRISANMILPYPPGVPLVMPGEMITEQSRAVLDFLLMLCSIGRHYPGFETDIHGAILT EEGNIGYVC |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 0.0 | 72 |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 0.0 | 66 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ldcC | YP_003519105.1 | LdcC | VFG1670 | Protein | 0.0 | 66 |
