Gene Information

Name : yfeD (PANA_4203)
Accession : YP_003522498.1
Strain : Pantoea ananatis LMG 20103
Genome accession: NC_013956
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 4661467 - 4662297 bp
Length : 831 bp
Strand : +
Note : Chelated iron transport system membrane protein YfeD; Similar to Pantoea sp. At-9b, ABC-3 protein (NCBI: ZP_05730266.1); COG: Inorganic ion transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane

DNA sequence : 
ATGATGTGGCTGGAACCTTTTCAGTTTGGTTTTATGAATCATGCTTTACTCATCGCGGCGGTGGTTGCCGTGCCTTGTGC
GCTGCTGTCAGTCTTTTTGGTCCTGAAGGGCTGGGCGTTGATGGGTGATGCGATGAGCCATGCTGTCTTTCCAGGCATAG
TGCTGGCGTGGATGATGGCATTACCTCTGGCAGTGGGCGCATTCAGTGCCGGTTTGTTTTGTGCTGTCGCCAGTGGCTAC
CTTAAAGAGAACAGCAGAATCAAGCAGGACACGGTTCTGGGTATTGTTTTTTCCGGGATGTTTGCGGTTGGCCTGATTTT
GTACATCGCCCTGAAACCGGAGATCCACCTCGACCATATTTTATTCGGCGATATGCTGGGGATCAGCCAAAGCGATATTT
TTCAGACGTTAGGCATTGCCGCTGTGATTGTCGCTGTCGTCGGTCTGAAATGGCGCGATTTCATGCTGTTCAGCTTTGAT
CCTCAACAGGCTCAGGTGTGCGGGCTTTCGGTGCGCTGGCTGCATTATAGCCTGTTGTGTATGGTGTCTCTGACCATTGT
GGCAACGCTTAAGGCAGTAGGGATTATTTTATCGATTTCATTGCTTATTGCACCCGGAGCGATTGCCGTTTTGCTGACGG
ATCGGTTTTCCCATGCGTTGATACTGGCGACGTTTGTTTCGCTGGTTGTCTCACTCTGCGGCGTTTATCTCTCATTTTTT
ATTGACAGTGCTCCCGCACCAACCATTGTGGTGCTTTTCGCTCTGGTCTTTATCGTCAGCTTTATCACCACTCACTATAA
ACTTTCTCGCCTGTCTAAATCCTCCTGCTGA

Protein sequence : 
MMWLEPFQFGFMNHALLIAAVVAVPCALLSVFLVLKGWALMGDAMSHAVFPGIVLAWMMALPLAVGAFSAGLFCAVASGY
LKENSRIKQDTVLGIVFSGMFAVGLILYIALKPEIHLDHILFGDMLGISQSDIFQTLGIAAVIVAVVGLKWRDFMLFSFD
PQQAQVCGLSVRWLHYSLLCMVSLTIVATLKAVGIILSISLLIAPGAIAVLLTDRFSHALILATFVSLVVSLCGVYLSFF
IDSAPAPTIVVLFALVFIVSFITTHYKLSRLSKSSC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-85 70
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-85 70
sitD NP_461785.1 permease Virulence SPI-1 Protein 7e-86 70
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 5e-86 70
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-85 70
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 3e-41 41
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-41 41
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-41 41
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-41 41
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-41 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD YP_003522498.1 hypothetical protein BAC0352 Protein 3e-86 70
yfeD YP_003522498.1 hypothetical protein BAC0442 Protein 2e-65 57
yfeD YP_003522498.1 hypothetical protein BAC0351 Protein 2e-41 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD YP_003522498.1 hypothetical protein VFG0528 Protein 3e-86 70
yfeD YP_003522498.1 hypothetical protein VFG0527 Protein 1e-41 41