Gene Information

Name : yfeC (PANA_4202)
Accession : YP_003522497.1
Strain : Pantoea ananatis LMG 20103
Genome accession: NC_013956
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 4660610 - 4661470 bp
Length : 861 bp
Strand : +
Note : Chelated iron transport system membrane protein YfeC; Similar to Enterobacter sp. 638, ABC-3 protein (NCBI: YP_001175845.1); COG: Inorganic ion transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane

DNA sequence : 
ATGACCGCGCTCCTTGAACCTTTTGGTTATCAATATATGTTGAACGCCATGTGGATTTCAGCCATGGTCGGCGGGCTGTG
CGCCTTTCTGTCCTGTTATCTGATGTTAAAGGGCTGGTCGCTTATTGGTGATGCGCTGTCACACTCTATTGTTCCCGGTG
TCGCGGGCGCTTACATGCTCGGATTGCCGTTTGCGTTGGGCGCTTTTTTATCAGGGGGCTTAGCGGCAGGGAGCATGCTG
TTGCTCAACCAGCGCACGCGGCTGAAAGAAGATACCATCATCGGCCTGATTTTTTCTTCGTTCTTCGGCCTTGGGCTGTT
TATGGTTTCCCTCAATCCCACTTCGGTAAATATTCAGACTATCGTGCTGGGCAATATTCTGGCTATTGCGCCTTCCGATA
TCATTCAGCTGCTTATTATCGGACTGACTTCTGTCGCCATTTTGTTTTTCAAATGGAAAGATTTAATGGTCACCTTTTTC
GATGAAAACCATGCTCGCGTCGTTGGTTTAAATCCGGTGCGTCTTAAGATCTTATTTTTCACTTTGTTGGCCGTTTCGAC
CGTGGCTGCGTTACAAACTGTGGGCGCGTTTCTGGTTATCTGTCTGGTTGTCACGCCAGGCGCAACGGCCTGGTTGCTGA
CCGATCGCTTTCCCCGGCTACTTGCCATCGCGGTTGCCATTGGCAGCATCACGAGCTTTATGGGCGCGTGGGCAAGTTAT
TATCTCGATGGCGCAACGGGCGGCATTATTGTCGTTGCGCAAACGTTACTGTTTTTACTGGCCTTCATCTTTGCGCCTAA
GCACGGTGTGCTGGCGAATCGTCGTCGTGCCCGGGCGCATGCTGTGCGGGAGACAAGATGA

Protein sequence : 
MTALLEPFGYQYMLNAMWISAMVGGLCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFALGAFLSGGLAAGSML
LLNQRTRLKEDTIIGLIFSSFFGLGLFMVSLNPTSVNIQTIVLGNILAIAPSDIIQLLIIGLTSVAILFFKWKDLMVTFF
DENHARVVGLNPVRLKILFFTLLAVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFPRLLAIAVAIGSITSFMGAWASY
YLDGATGGIIVVAQTLLFLLAFIFAPKHGVLANRRRARAHAVRETR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-82 87
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-82 87
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-82 87
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-82 87
sitC NP_461784.1 permease Virulence SPI-1 Protein 2e-82 87
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 5e-36 43
sitD NP_461785.1 permease Virulence SPI-1 Protein 7e-36 43
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-35 42
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-35 42
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-35 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeC YP_003522497.1 hypothetical protein BAC0351 Protein 1e-82 87
yfeC YP_003522497.1 hypothetical protein BAC0441 Protein 2e-63 69
yfeC YP_003522497.1 hypothetical protein BAC0352 Protein 3e-36 43
yfeC YP_003522497.1 hypothetical protein BAC0442 Protein 4e-31 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeC YP_003522497.1 hypothetical protein VFG0527 Protein 1e-82 87
yfeC YP_003522497.1 hypothetical protein VFG0528 Protein 3e-36 43