Gene Information

Name : tetD (PANA_3750)
Accession : YP_003522045.1
Strain : Pantoea ananatis LMG 20103
Genome accession: NC_013956
Putative virulence/resistance : Resistance
Product : TetD
Function : -
COG functional category : K : Transcription
COG ID : COG2207
EC number : -
Position : 4151923 - 4152387 bp
Length : 465 bp
Strand : +
Note : Transposon Tn10 tetD protein; Similar to Pantoea sp. At-9b, transcriptional regulator, AraC family (NCBI: ZP_05731819.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic

DNA sequence : 
ATGAATGAGAACAAATACAATGAGAGCGTGATTATTTCTGTTACTGACTGGATTAATAAGAATCTGGACCAGCGCTTAAG
CATTGACGACATTGCTGAAAAGGCGGGTTATTCAAAATGGTATCTACAAAAGTTATTTTCCCGTTATCATAATGAAACGC
TGGCCCATTACATCCGTAGAAAGAAATTAATTGCCTGTATTAATGATTTAAAATACAGCCATGCGCCCATTATCAGCCTG
GCGGTTAAATACCACTTTGAAAGTCAGCAGTCTTTTACCCGCTCCTTCAAGCAGATGATGGGCTGTACGCCTAGCGTATG
CCGTAAAAGCCAGCGACTGAACGTTACCGACAGCAACGCCCATCCTTGCAGCGTATGTAGTAAGGCTGAAAACCCCCCAA
AAAAGAAGTTATTTAGCGGAATAAACGAAACCTTCGGGGTTGGTCATTTAGTCCGCTTGCTTTAA

Protein sequence : 
MNENKYNESVIISVTDWINKNLDQRLSIDDIAEKAGYSKWYLQKLFSRYHNETLAHYIRRKKLIACINDLKYSHAPIISL
AVKYHFESQQSFTRSFKQMMGCTPSVCRKSQRLNVTDSNAHPCSVCSKAENPPKKKLFSGINETFGVGHLVRLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 4e-22 45
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 4e-22 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tetD YP_003522045.1 TetD NC_010558.1.6276025. Protein 2e-22 45
tetD YP_003522045.1 TetD CP000647.1.gene1624. Protein 8e-20 41
tetD YP_003522045.1 TetD CP001918.1.gene2033. Protein 1e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tetD YP_003522045.1 TetD VFG1038 Protein 2e-22 45