Gene Information

Name : iucD (PANA_0353)
Accession : YP_003518648.1
Strain : Pantoea ananatis LMG 20103
Genome accession: NC_013956
Putative virulence/resistance : Virulence
Product : IucD
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG3486
EC number : -
Position : 423856 - 425190 bp
Length : 1335 bp
Strand : +
Note : L-lysine 6-monooxygenase; Similar to Citrobacter koseri ATCC BAA-895, hypothetical protein CKO_00970 (NCBI: YP_001452553.1); COG: Secondary metabolites biosynthesis, transport and catabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic

DNA sequence :
ATGACAAACACTGTTGATTTTATTGGCGTTGGCATTGGCCCGTTTAACCTGAGTATCGCGGCGCTGGCACACGAAGCTGA
AGGCTTTACCAGCCAGTTTTTAGACAGTCGCCCAGATTTTGCCTGGCATCCCGGTATGCTGGTGCCTGACTGCCATATGC
AGACCTCGTTTTTAAAAGATCTGGTCTCCGCGGTCGCGCCCACCAGCCCGTTCAGCTTTGTGAACTATCTGGTGAAGCGT
AAAAAGTTTTACCGCTTTATGACCACCGAGTTACGTACCGTCTCGCGCGATGAGTTTTCCGACTATCTGCGCTGGGCTGC
CGAGGGCATGAACAACCTGCGCTTTAATCACACGGTGGAACGCATCGATTTTGATGAGGCCAATAAACGCTTTGTGATTC
ACAGCAACGGCGGGGAAAGCTATGCCCGCAACATCTGTCTGGGCATCGGCAAGCAGCCCTACCTGCCGCCCTGCGTAAAC
CGCATCAGCGCCACCTGTTTCCACGCCAGCGAAATGAGCCTGCGTAAACCCGACCTGCGCGGCAAGCGTGTGGCGGTGAT
TGGCGGCGGTCAAAGTGGTGCCGATCTGTTCCTCAACGCCTTCCGGGGCGAGTGGGGCGAACCGGCTGAGGTCAGTTGGG
TATCACGCCGCAACAATTTTAACGCCTTGGATGAGGCCGCTTTCGCCAACGAATACTTCACCCCAGAGTACGTTTCCAGC
TTTGTCGGTCTGAACGAGGCTGCCCGACAGAAAATGCTGGCTGAACAGAAGATGACCTCGGACGGCATCACGGCAGATTC
CCTGCTGACGATTTATCGCGAGCTGTATCACCGCTTTGAAGTGCAGCGTCAGCCGCGCAATGCGCACCTGCTGCCGAGCC
GCTCGGTCATTGAACTCAACAGTCATCACCAGGGCTGGCAGCTTCAGTTGCAGCATCAGCTTGACCAGGGCTACGACCTT
ATCGAATGCGATGTGGTGATTTTCGCCACCGGCTACCGGCCTGCGCTGCCAGAACTGCTTTCCCCCCTGATGAGCCGCCT
GACTATGAAAGATGAGTGCACGTTCAGCGTGCGTGAGGACTTCACGCTTGAGTGGAACGGGCCAAAAGAAAATAACATCT
TTGCGGTGAACGCCAGTATGCAAACCCACGGTATCGCGGAGCCTCAGCTCAGCCTGATGGCATGGCGATCCGCCCGTATT
CTGAATCGCGCACTGGGGCGTGATTTGTTCGATCTCAGCACGCCGCCCGCCCTGATCCAGTGGCGCAGCGTCAGCCGGGA
AAAACCGCAGCATGGCGCTGCGTCCACTAAAAACTATACCGAGTCCTTGGGGTAA

Protein sequence :
MTNTVDFIGVGIGPFNLSIAALAHEAEGFTSQFLDSRPDFAWHPGMLVPDCHMQTSFLKDLVSAVAPTSPFSFVNYLVKR
KKFYRFMTTELRTVSRDEFSDYLRWAAEGMNNLRFNHTVERIDFDEANKRFVIHSNGGESYARNICLGIGKQPYLPPCVN
RISATCFHASEMSLRKPDLRGKRVAVIGGGQSGADLFLNAFRGEWGEPAEVSWVSRRNNFNALDEAAFANEYFTPEYVSS
FVGLNEAARQKMLAEQKMTSDGITADSLLTIYRELYHRFEVQRQPRNAHLLPSRSVIELNSHHQGWQLQLQHQLDQGYDL
IECDVVIFATGYRPALPELLSPLMSRLTMKDECTFSVREDFTLEWNGPKENNIFAVNASMQTHGIAEPQLSLMAWRSARI
LNRALGRDLFDLSTPPALIQWRSVSREKPQHGAASTKNYTESLG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iucD NP_709457.1 lysine:N6-hydroxylase Virulence SHI-2 Protein 5e-160 74
iucD YP_002414043.1 L-lysine 6-monooxygenase Virulence Not named Protein 3e-160 74
iucD AAK71634.1 IucD Virulence SHI-3 Protein 2e-158 74
iucD AAD44749.1 IucD Virulence SHI-2 Protein 4e-160 74
iucD NP_839220.1 lysine:N6-hydroxylase Virulence SHI-2 Protein 5e-160 74

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
iucD YP_003518648.1 IucD VFG1084 Protein 1e-158 74
iucD YP_003518648.1 IucD VFG0937 Protein 1e-160 74
iucD YP_003518648.1 IucD VFG0618 Protein 2e-160 74