Gene Information

Name : marA (PANA_0309)
Accession : YP_003518604.1
Strain : Pantoea ananatis LMG 20103
Genome accession: NC_013956
Putative virulence/resistance : Resistance
Product : MarA
Function : -
COG functional category : K : Transcription
COG ID : COG4977
EC number : -
Position : 375911 - 376318 bp
Length : 408 bp
Strand : +
Note : Multiple antibiotic resistance protein MarA; Similar to Pantoea sp. At-9b, transcriptional regulator, AraC family (NCBI: ZP_05732327.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic

DNA sequence : 
GTGTGTTCCCTGCACATCTGCTTTAACCAGGAGAACACCATGAATCAGCGCGAGTTTATTCGTAGTTTGCTGGAATGGAT
AGAAAGCAATTTAGGACACGATCTGCATCTGGACGAAGTTGCTCGCCGCGCGGGCTATTCCCGTTGGCACCTGCAACGGT
TATTTCGCCAGCATACCGGCTTCTCACTGGCCGAGTATATCCGTCAGCGCCGTCTGACCGAGTCGGCCCTGACGCTGCTT
AACAGCAACGAAGCGATTTTACAGGTGGCAATGAGCTATGGGTTTGATACCCAACAGGCCTACACACGAACGTTTAAAAA
CTATTTTATGGTCACGCCGGGTCAACTGCGCCGTCAGCGCCGGGTAGAGCCAGATCGTTTATTATTCCCTTATGCCATGG
CAAGTTAG

Protein sequence : 
MCSLHICFNQENTMNQREFIRSLLEWIESNLGHDLHLDEVARRAGYSRWHLQRLFRQHTGFSLAEYIRQRRLTESALTLL
NSNEAILQVAMSYGFDTQQAYTRTFKNYFMVTPGQLRRQRRVEPDRLLFPYAMAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 9e-23 51
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 9e-23 51
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 4e-20 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
marA YP_003518604.1 MarA CP000647.1.gene1624. Protein 2e-24 54
marA YP_003518604.1 MarA CP001918.1.gene2033. Protein 1e-25 54
marA YP_003518604.1 MarA BAC0560 Protein 3e-25 53
marA YP_003518604.1 MarA NC_002695.1.917339.p Protein 3e-25 53
marA YP_003518604.1 MarA CP000034.1.gene1596. Protein 3e-25 53
marA YP_003518604.1 MarA CP001138.1.gene1637. Protein 9e-25 52
marA YP_003518604.1 MarA NC_010558.1.6276025. Protein 4e-23 51
marA YP_003518604.1 MarA CP001138.1.gene612.p Protein 3e-22 43
marA YP_003518604.1 MarA CP001138.1.gene4488. Protein 1e-20 41
marA YP_003518604.1 MarA CP001918.1.gene327.p Protein 2e-20 41
marA YP_003518604.1 MarA CP000647.1.gene4499. Protein 2e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
marA YP_003518604.1 MarA VFG1038 Protein 4e-23 51
marA YP_003518604.1 MarA VFG0585 Protein 1e-20 41