Gene Information

Name : alpA (PANA_2916)
Accession : YP_003521211.1
Strain : Pantoea ananatis LMG 20103
Genome accession: NC_013956
Putative virulence/resistance : Virulence
Product : AlpA
Function : -
COG functional category : K : Transcription
COG ID : COG3311
EC number : -
Position : 3279053 - 3279319 bp
Length : 267 bp
Strand : +
Note : hypothetical protein ORF88; Similar to Enterobacter sp. 638, phage transcriptional regulator, AlpA (NCBI: YP_001177821.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown

DNA sequence : 
ATGCACACCGCTTTAACCGCACCACCCTCCGCCCCGGCGGCTCCGTCAGCCCCTTACGTGCCGCCGGGGCAGGAGCGCTT
TATGCGCCTGCCGGAGGTCATTCACGTCTGCGGCCTGTCCCGCTCGACGATTTACGACCTCATCAGCCGCGAGGCCTTTC
CCGCGCAGATTTCGCTCGGCGGCAAGAACGTCGCGTGGGCGGCCAGCGAGGTGAACGCATGGATGAACGAACGCATCGCC
GCCCGGAGTCAGGGGCGTGCGGCATGA

Protein sequence : 
MHTALTAPPSAPAAPSAPYVPPGQERFMRLPEVIHVCGLSRSTIYDLISREAFPAQISLGGKNVAWAASEVNAWMNERIA
ARSQGRAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1809 NP_231443.1 transcriptional regulator Not tested VPI-2 Protein 1e-11 43
VC0395_A1406 YP_001217349.1 transcriptional regulator Not tested VPI-2 Protein 1e-11 43
VPI2_0041 ACA01856.1 predicted transcriptional regulator Not tested VPI-2 Protein 2e-11 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
alpA YP_003521211.1 AlpA VFG1141 Protein 3e-12 43