Gene Information

Name : soxS (PANA_0281)
Accession : YP_003518576.1
Strain : Pantoea ananatis LMG 20103
Genome accession: NC_013956
Putative virulence/resistance : Resistance
Product : SoxS
Function : -
COG functional category : K : Transcription
COG ID : COG2207
EC number : -
Position : 341006 - 341431 bp
Length : 426 bp
Strand : -
Note : Regulatory protein SoxS; Similar to Pantoea sp. At-9b, transcriptional regulator, AraC family (NCBI: ZP_05731748.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic

DNA sequence : 
ATGATACAAGAAGAGATCATTCATTCACTGACGCACTGGATTGACCAAAACCTGGATAAGAGCCTGTCAATTGACGAAGT
CGCCGCCAAATCAGGCTATTCGAAATGGCATCTGCAACGTATGTTCCGTAGCGTGACGAAACAGACGTTGGGTGGCTATA
TTCGCGAACGCCGCCTGACGCTGGCCGCTGAAGCGCTGCGACAAACGCAGCGGCCGGTGTTTGATATTGCGATGCAATAT
GGCTATGACTCGCAACAGACATTCTCACGCGTTTTTCGTCGCCAGTTTTCACAAACGCCCACGGCTTATCGCCACGCGAT
GCGCCGCCAGGCCATCCAGCGTCCGCGTTTGATGCGCTTTGACTGCAGCGACACGATGACCAGCTTTACCCAGCGGACAA
CGGGAGAATGCTGTCCGGTTAGCTGA

Protein sequence : 
MIQEEIIHSLTHWIDQNLDKSLSIDEVAAKSGYSKWHLQRMFRSVTKQTLGGYIRERRLTLAAEALRQTQRPVFDIAMQY
GYDSQQTFSRVFRRQFSQTPTAYRHAMRRQAIQRPRLMRFDCSDTMTSFTQRTTGECCPVS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 1e-33 66
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 2e-23 48
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 2e-23 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
soxS YP_003518576.1 SoxS CP000647.1.gene4499. Protein 8e-35 68
soxS YP_003518576.1 SoxS BAC0371 Protein 1e-33 67
soxS YP_003518576.1 SoxS NC_002695.1.914293.p Protein 1e-33 67
soxS YP_003518576.1 SoxS CP001918.1.gene327.p Protein 8e-35 67
soxS YP_003518576.1 SoxS CP001138.1.gene4488. Protein 4e-34 66
soxS YP_003518576.1 SoxS CP000034.1.gene4505. Protein 2e-33 66
soxS YP_003518576.1 SoxS CP001138.1.gene612.p Protein 4e-27 50
soxS YP_003518576.1 SoxS NC_010558.1.6276025. Protein 1e-23 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
soxS YP_003518576.1 SoxS VFG0585 Protein 4e-34 66
soxS YP_003518576.1 SoxS VFG1038 Protein 1e-23 48