Gene Information

Name : intA (PANA_2912)
Accession : YP_003521207.1
Strain : Pantoea ananatis LMG 20103
Genome accession: NC_013956
Putative virulence/resistance : Unknown
Product : IntA
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 3275108 - 3276307 bp
Length : 1200 bp
Strand : +
Note : Prophage CP4-57 integrase; Similar to Escherichia coli ATCC 8739, integrase family protein (NCBI: YP_001724057.1); COG: DNA replication, recombination and repair; Subcellular localization as predicted by Psort 2.0: Unknown

DNA sequence : 
ATGGCAAGGACTACGCGCCCATTGACCAATACAGAAGTGCTACGTGCCAAAGCAGTCGATAAAGAGCTGACGCTGCACGA
TGGAGATGGGCTGTTCTTACTGGTCAAAACAAGCGGCAAGAAACTGTGGCGCTTTCGCTATCAACGTCCAAAGACTAAGC
AGCGTACCATGATGGGCCTCGGTGCCTTCCCTGCTCTGTCGCTGGCTGATGCACGACGCCTACGCGCTGAATACCTCTCG
TTGTTAGCTAACGGCATTGACCCACAAACTCAGGCCGAACAGGCTACAGAACAGCAGCAGATTGCCTTAGAAAGCATTTT
CTCAACCGTGGCAGCTAATTGGTTTCAACTCAAAAGCAAAAGCGTTACCCCGGATTACGCAAAAGACATTTGGCGCTCAT
TAGAAAAAGATGTATTCCCTGCCATTGGTGAGATACCTGTTCAGCAAATCAAAGCTCGAACATTGGTTGAAGCACTTGAG
CCTATCAAAGTGCGTGGTGCGCTGGAAACAGTTCGTCGCTTAGTACAACGTATCAACGAAATAATGATTTACGCGACTAA
TACAGGTTTGATTGATGCCAATCCAGGATCAGGTATTGGTATGGCTTTTGAGAAACCTAAAAAGCAAAACATGCCTACCT
TAAGGCCAGAGGAGTTACCGAATCTGATGCGTTCTCTAGCAATGTCAAATCTATCCGTGACGACTCGCTGTTTAATAGAA
TGGCAGCTTTTAACGCTTGTTCGTCCTTCTGAAGCATCTGGGACTCGATGGATAGAGATCGATTTTGCTGCTAAACTCTG
GGTGATACCAGCAGAGCGAATGAAATCTAAGCGTGAGCATATTGTTCCCCTATCGCCACAGGCGTTAGATATTTTGGAAG
TATTGAAACCTATAAGCGTTCATCGCGAATATGTCTTCCCAAGTCGTAATGATCCAAGGCAGCCAATGAATAGCCAAACG
GCCAATGCTGCTCTTAAACGTATAGGTTACAGAGGTAAACTAGTTGCACATGGCTTACGTTCAATAGCTAGCACGGCTCT
AAATGAGTCAAACTTTAACTCTGATGTGATTGAATCTGCGCTAGCCCATTCAGATAGGAATGAAGTTAGAAAAGCATATA
ATCGGTCCATTTATTTGAAGCAAAGAGTGGAACTAATGGATTGGTGGGGTAATTTCGTTAAGGTAACTAACAAATCATAA

Protein sequence : 
MARTTRPLTNTEVLRAKAVDKELTLHDGDGLFLLVKTSGKKLWRFRYQRPKTKQRTMMGLGAFPALSLADARRLRAEYLS
LLANGIDPQTQAEQATEQQQIALESIFSTVAANWFQLKSKSVTPDYAKDIWRSLEKDVFPAIGEIPVQQIKARTLVEALE
PIKVRGALETVRRLVQRINEIMIYATNTGLIDANPGSGIGMAFEKPKKQNMPTLRPEELPNLMRSLAMSNLSVTTRCLIE
WQLLTLVRPSEASGTRWIEIDFAAKLWVIPAERMKSKREHIVPLSPQALDILEVLKPISVHREYVFPSRNDPRQPMNSQT
ANAALKRIGYRGKLVAHGLRSIASTALNESNFNSDVIESALAHSDRNEVRKAYNRSIYLKQRVELMDWWGNFVKVTNKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 1e-99 52
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 1e-98 52
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 1e-98 52
int AAK20773.1 integrase Not tested VPI Protein 8e-99 52
int AAK20803.1 integrase Not tested VPI Protein 8e-99 52
unnamed AAA82714.1 integrase Not tested VPI Protein 8e-99 52
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 1e-83 48
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 5e-83 48
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 5e-83 48
int AAD44730.1 Int Not tested SHI-2 Protein 9e-67 43
int CAC39282.1 integrase Not tested LPA Protein 2e-65 42
aec33 AAW51716.1 Int Not tested AGI-3 Protein 9e-66 42
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 1e-65 42
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 1e-65 42
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 8e-66 42
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 3e-63 41
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-63 41
ECs4534 NP_312561.1 integrase Not tested LEE Protein 3e-63 41
int ACU09430.1 integrase Not tested LEE Protein 2e-63 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
intA YP_003521207.1 IntA VFG1092 Protein 2e-83 48
intA YP_003521207.1 IntA VFG0598 Protein 5e-66 42
intA YP_003521207.1 IntA VFG0783 Protein 1e-63 41