Gene Information

Name : PANA_2446 (PANA_2446)
Accession : YP_003520741.1
Strain : Pantoea ananatis LMG 20103
Genome accession: NC_013956
Putative virulence/resistance : Virulence
Product : hypothetical Protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3157
EC number : -
Position : 2727939 - 2728421 bp
Length : 483 bp
Strand : -
Note : Hemolysin coregulated Protein Hcp; Similar to Pantoea sp. At-9b, type VI secretion system effector, Hcp1 family (NCBI: ZP_05731830.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Extracellular

DNA sequence :

ATGGCTATTGATATCTTTTTGAAAATAGATGGAATTGAAGGTGAGTCGCAAAATGCAAACCATAAAAAATGGATAGATGT
TCTGTCATTTAACTGGGGCGCGCAGCAACCAGGTAATATGTCCGTTGGCGGTGGTGGCGGTGCGGGAAAAGTGAATTATC
GCGATTTAAGTGTTGAGGCATTGATCGATAAGGCCACACCGGCGTTAGTGAAATATTGTGCCAGTGGTAAGCATCTGCCA
AAAATTCAGCTGTCTGTTTGCAAGGCAGGCGGGCAGGAAGTGGAATATACTCGCATCACGCTTGAAGATGTGCTGGTTAC
GCAGACTGACTTTACCGGCATTGGTCACGCGTCCACGCTGGGTATGCAGTATTCCTTTCAAGCCAGCAAGGTTGCGCTGG
AATACTGGGAACAGGCTTCTCAGGGAACGAAAGCCGCTTCTGTGCAGATGGGTTGGGATATCAAGCAAAATAAAGAAAGC
TAA

Protein sequence :

MAIDIFLKIDGIEGESQNANHKKWIDVLSFNWGAQQPGNMSVGGGGGAGKVNYRDLSVEALIDKATPALVKYCASGKHLP
KIQLSVCKAGGQEVEYTRITLEDVLVTQTDFTGIGHASTLGMQYSFQASKVALEYWEQASQGTKAASVQMGWDIKQNKES

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
STY0302	NP_454882.1	conserved hypothetical protein	Not tested	SPI-6	Protein	8e-22	44

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PANA_2446	YP_003520741.1	hypothetical Protein	VFG2071	Protein	4e-19	45