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Name : topB (PANA_2102) Accession : YP_003520397.1 Strain : Pantoea ananatis LMG 20103 Genome accession: NC_013956 Putative virulence/resistance : Unknown Product : TopB Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : - Position : 2348742 - 2350658 bp Length : 1917 bp Strand : - Note : DNA topoisomerase III; Similar to Pantoea sp. At-9b, DNA topoisomerase III (NCBI: ZP_05729421.1); COG: DNA replication, recombination and repair; Subcellular localization as predicted by Psort 2.0: Cytoplasmic DNA sequence : ATGCGTTTGTTTATTGCAGAGAAACCCAGCCTTGGACGGGCCATTGCCGATGTACTGCCTAAACCGCACCGGCGTGGTGA GGGCTTTATCGCCTGCGGCAATGACCAGATTGTCACCTGGTGCGTGGGGCATTTACTGGAGCAGGCGCAGCCTGATGTGT ACGACAGCCGCTATGCGCGCTGGTCGCTGGTCGATCTGCCGATTATTCCTGAAAAATGGCGTTTGCAGCCGCGTCCTTCG GTGGCAAAACAACTCAAAGTGGTGGAAGGCTTACTGGCCCAGGCCGATGAAGTGGTGCACGCCGGCGACCCGGACAGGGA AGGCCAGCTGCTTGTGGATGAAGTGCTGGATTACCTTCAGCTTCCCGCTGAGAAACGCAGTAAAGTGCAGCGCTGTCTGA TTAACGATCTTAACCCACAGGCTGTGGAGCGGGCTATCAACCGGCTGCGTGAGAATCGCGAATTTATTCCGCTCTGCGTG TCCGCGCTGGCGCGAGCACGTGCCGACTGGCTTTACGGTATTAATATGACCCGCGCCTGGACGCTGCTGGGCCGGAATGC GGGCTATGATGGCGTGTTGTCCGTTGGACGCGTACAAACGCCGGTGTTGGGGCTGGTGGTGCGACGGGATGAAGAGATCG CGAATTTCGTCCCGAAGGATTACTTTGAAGTGAAAGCGCACATCGTCACGCCGGATGAGAGCCGGTTTACCGCGAACTGG ATCCCCAGTGAAGCCTGTGAACCCTGGCAGGATGAAGAAGGTCGCCTGCTGAAACGCTCCCTGGCGGAACATGTGGTGGC GCGCATCAGCGGTCAGCCCGCTATCGTTACCGCCTACAGTGACAAGCGAGAAAACGACATTGCACCGTTGCCGTTTTCAC TCTCCAGCCTGCAAATCGAGGCGGCAAAGCGCTTTGGTTTGAGTGCACAGGCGGTGCTGGACATCTGCCAGCGGCTATAT GAAACCCACAAGCTGATCACCTATCCACGTTCTGATAGCCGCTACTTACCCGATGAGCATTTTGCCGGCCGTCATGCGGT GCTCAATGCGATCCAGTCCCATCAATCCGGTCTTATTCCACCAGCAGACTTTGATGCAGATCGAAAAAATCGCTGTTGGG ATGACAAAAAAGTGGATGCGCACCACGCCATTATTCCTACCGCGCGCGCCAGCGCAGTGAAGCTTAATGAAAACGAACAG CAGATTTATGGACTGGTTGCGCGTCAGTATTTGATGCAATTTTGTCCGGATGCCGTGTTCCGCAAATGCACTATCGATCT GGATATCGCGGGCGGTAAATTTGTGGCTAAAGCGCGCTTTCTGGCGGAGGCGGGCTGGCGTGCGCTGTTGGGTGGCAAAG AGCGCGATGAAGAAAACGATGGCATGCCGCTGCCTGTTGTAGCGAAAGACGATGAGCTGCTGTGCGAGCGGGGTGAGGTG CTGGCGAAACAGACACAACCGCCACGCCACTTTACCGACGCGACCTTGCTTTCGGCCATGACCGGCATTGCGCGCTTTGT GCAGGATAAAGAATTAAAGAAAGTGCTGCGTGCGACCGATGGTTTAGGAACGGAAGCCACGCGCGCAGGCATTATTGAAT TACTGTTCCGTCGTTCGTTTTTGCATAAGAAAGGGCGCTATATTCATTCTACTGATGCAGGCAAAGCGCTGATCCACTCG CTACCGGATCTCGCCGCCAGGCCGGACATGACGGCGCAATGGGAATCAACCCTGACGCGTATCAGTGAAAAGGCCTGTCG CTATGATGAATTTATGCAACCCCTGGTGCAGACGCTGAGCGGGCTTATTCAGCAGGCGCGACAGCAGCCCTCGGGACAGG CGTTTCGTGGTTTACCGTCCACCGGCCAAAAACGTCCACCGCGTAAAGCAGGGCGTAAAACGAAGGAAACTGAATAA Protein sequence : MRLFIAEKPSLGRAIADVLPKPHRRGEGFIACGNDQIVTWCVGHLLEQAQPDVYDSRYARWSLVDLPIIPEKWRLQPRPS VAKQLKVVEGLLAQADEVVHAGDPDREGQLLVDEVLDYLQLPAEKRSKVQRCLINDLNPQAVERAINRLRENREFIPLCV SALARARADWLYGINMTRAWTLLGRNAGYDGVLSVGRVQTPVLGLVVRRDEEIANFVPKDYFEVKAHIVTPDESRFTANW IPSEACEPWQDEEGRLLKRSLAEHVVARISGQPAIVTAYSDKRENDIAPLPFSLSSLQIEAAKRFGLSAQAVLDICQRLY ETHKLITYPRSDSRYLPDEHFAGRHAVLNAIQSHQSGLIPPADFDADRKNRCWDDKKVDAHHAIIPTARASAVKLNENEQ QIYGLVARQYLMQFCPDAVFRKCTIDLDIAGGKFVAKARFLAEAGWRALLGGKERDEENDGMPLPVVAKDDELLCERGEV LAKQTQPPRHFTDATLLSAMTGIARFVQDKELKKVLRATDGLGTEATRAGIIELLFRRSFLHKKGRYIHSTDAGKALIHS LPDLAARPDMTAQWESTLTRISEKACRYDEFMQPLVQTLSGLIQQARQQPSGQAFRGLPSTGQKRPPRKAGRKTKETE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 2e-109 | 42 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 2e-105 | 41 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 2e-105 | 41 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 1e-105 | 41 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 1e-104 | 41 |
