Gene Information

Name : tpx (PANA_2019)
Accession : YP_003520314.1
Strain : Pantoea ananatis LMG 20103
Genome accession: NC_013956
Putative virulence/resistance : Virulence
Product : Tpx
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG2077
EC number : -
Position : 2259573 - 2260076 bp
Length : 504 bp
Strand : +
Note : Probable thiol peroxidase; Similar to Pantoea sp. At-9b, Redoxin domain protein (NCBI: ZP_05729579.1); COG: Posttranslational modification, protein turnover, chaperones; Subcellular localization as predicted by Psort 2.0: Periplasmic

DNA sequence : 
ATGTCTCAGACTGTTCACTTTCAGGGCAACCCTGTAGCGGTTGCAGGTCAGTTCCCGCAGCCGGGCGATAGCGTTAACGC
TTTTACCCTCGTGGCGAAAAACCTGTCTAACGTTTCACTCTCTGAGTATGCAGGAAAACGCAAGATTCTGAATATTTTTC
CCAGCGTCGATACCGGCGTGTGCGCCTCTTCGGTGCGCAAGTTTAACCAGTTAGCGGGCGAACTGAATAACACGGTGGTG
TTATGTATTTCCGCCGACCTGCCCTTTGCTCAATCGCGTTTTTGTGGCGCAGACAACCTCAACAACGTGGTTACGCTGTC
AACGCTGCGCGGCGGGGAATTCAAAAAAGATTTTGGCGTGGAAATTGCTGATGGTGCCCTTCAGGGTCTGACGGCCCGTG
CCGTTATCGTACTGGATGAGCATGACAAAGTGCTTTACAGCCAGCTGGTGAATGAGATCACCACTGAACCCGATTATGAT
GCCGCACTCGCTGCGCTGAAATAA

Protein sequence : 
MSQTVHFQGNPVAVAGQFPQPGDSVNAFTLVAKNLSNVSLSEYAGKRKILNIFPSVDTGVCASSVRKFNQLAGELNNTVV
LCISADLPFAQSRFCGADNLNNVVTLSTLRGGEFKKDFGVEIADGALQGLTARAVIVLDEHDKVLYSQLVNEITTEPDYD
AALAALK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tpx NP_230472.1 thiol peroxidase Virulence VPI-1 Protein 9e-36 50
tagD AAK20781.1 toxR-activated gene D protein Virulence VPI Protein 6e-36 50
tpx YP_001216305.1 thiol peroxidase Not tested VPI-1 Protein 2e-35 48
tagD AAK20751.1 toxR-activated gene D protein Virulence VPI Protein 1e-35 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tpx YP_003520314.1 Tpx VFG0087 Protein 3e-36 50