Gene Information

Name : ycgE (PANA_1255)
Accession : YP_003519550.1
Strain : Pantoea ananatis LMG 20103
Genome accession: NC_013956
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : K : Transcription
COG ID : COG0789
EC number : -
Position : 1422323 - 1423057 bp
Length : 735 bp
Strand : -
Note : Putative HTH-type transcriptional regulator YcgE; Similar to Pantoea sp. At-9b, transcriptional regulator, MerR family (NCBI: ZP_05732431.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown

DNA sequence : 
ATGACCTTATACAGTATCGGCGATGTCGCCGAACGCTGTGGCATAAATCCGGTTACCTTACGCGCCTGGCAACGACGTTA
TGGATTATTGAAACCACAACGTACCGAAGGCGGTCATCGACAGTTCGATGAAGAAGATGTTCAGCGTATCCAGGAAATCA
TGCGCTGGATTGAAAGTGGAGTACCAGTAGGCAAGGTCAAAGCACTACTGGAAGGTGGAGATGTTGATTCCAACGATGGC
TGGACCGCCATGCAGGACGAACTCATCAGCATACTGCGCCATGTAAGACCGGCTAAGCTACGCAACAAGATCGCTTTAAT
TGGTCGCGAACATGCGGTTGATGCCTTGATCGATCACGTTTTTATGCCCATAAGGCAGAAACTCAGCCTGGATCAGAATA
CAGCACGGACAATGTGCAGCCTGCTGGATGGCATCCTGATCGACTACGTGGCTTTTTGTCTGGCAAGCAGTCGCAAAAAA
GCCGGTAAAGAAGCGCTGATTATTGGCTGGGGCATTGAAGATCGCACGCGCATCTGGCTGGAAGGATGGCGACTGTCGCA
GCACGGCTGGCGTATCGACGTGCTTGCCGAACCGCTTGATGTTCCCCGGCCCGAGTTATTTCCGGGGCTGAATATGTTTG
TTTTTACCGGTAAAAGACTGACGCGCCGTCAGCAGGAACAGCTGGCACACTGGCAGGAACAGGGATTCTCTGTACGTTTG
CACGACGCACACTGA

Protein sequence : 
MTLYSIGDVAERCGINPVTLRAWQRRYGLLKPQRTEGGHRQFDEEDVQRIQEIMRWIESGVPVGKVKALLEGGDVDSNDG
WTAMQDELISILRHVRPAKLRNKIALIGREHAVDALIDHVFMPIRQKLSLDQNTARTMCSLLDGILIDYVAFCLASSRKK
AGKEALIIGWGIEDRTRIWLEGWRLSQHGWRIDVLAEPLDVPRPELFPGLNMFVFTGKRLTRRQQEQLAHWQEQGFSVRL
HDAH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
t1258 NP_805061.1 transcriptional regulator Not tested SPI-2 Protein 3e-46 43
ORF 242 CAB37409.1 - Not tested SPI-2 Protein 2e-46 43
orf242 NP_460355.1 regulatory protein Not tested SPI-2 Protein 3e-46 43
STY1730 NP_456138.1 putative transcriptional regulator Not tested SPI-2 Protein 3e-46 43
SC1411 YP_216398.1 MerR family transcriptional regulator Not tested SPI-2 Protein 9e-46 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ycgE YP_003519550.1 hypothetical protein VFG0491 Protein 1e-46 43