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Name : rhsD (PANA_1076) Accession : YP_003519371.1 Strain : Pantoea ananatis LMG 20103 Genome accession: NC_013956 Putative virulence/resistance : Unknown Product : RhsD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3209 EC number : - Position : 1226493 - 1230686 bp Length : 4194 bp Strand : - Note : Protein rhsD precursor; Similar to Erwinia tasmaniensis Et1/99, Putative membrane-bound sugar-binding protein (NCBI: YP_001908915.1); COG: Cell wall/envelope/membrane biogenesis; Subcellular localization as predicted by Psort 2.0: Inner Membrane DNA sequence : ATGTTTGAAGCTGCACGCCTCGGCGATGATATCGGTCACTCTCATGCCCTGGCGGGCATGATTGCAGGCACTATCGTCGG TGGACTGATCGCTGCGGCGGGCGGTATTGCTGCGGGTGCATTGATGATTGCCGGGATAGGCGCCTCCTGCCTTGGCGTGG GCGTATTGCTGGTTGGACTCAGTATCGGCGTGGGTTACCTTACTGGCGAACTGGCCACCGCCGCGCGAGACGGAATAGCG GATGCTGGGGCGGCCAGCATGACCCCAAAGGGCAAGATTACCACCGGTTCGCCCAACGTCTTTATTAACAGTAAACCCGC CGCCATGGCCACCAACAGCATAGTGGCATGCAAGGACGATGGTCCGCAGCAGATGGCAGAAGGCTCCTCCCGGGTGTACA TCAACGGCCTGCCTGCATCACGCATTGACGATCGCACCACCTGCGATGCCAAAGTGATGACGGGTTCTGACAACGTCTAT ATCGGCGGCGAGCCTGAACAAACGCTGCCTATCCAACCTGAAGTGCCCGAATGGGTTTATAAAGCCTCCGATCTTACCCT GCTGTTTGCCGGGCTGGCCGGTGGCGTGGGCGGTGCGGCTGGCAAGGTCGGCGCGCTGGGTAAATTACTGAGCAAGATTC CCGGCATCAATAAAATCGCCCGGGTGGCCTGCCGTGCTGGTGCCTTAATGACCGGTGTGGCGGCCGCAGGTATTCTTGCC CGTCCCGTTGATATCGTAAGCGGCCAGAAGTTTCTTAGCGGCGATGATGAACTGGATTTTGTGCTGCCCTCCCGGCTGCC GCTACGCTGGCAGCGCTACTGGCGCAGCGGTAATCCCGGCGACAGCGTATTAGGCCGTGGCTGGAACCTGTTCTGGGAAA CACGGCTGGAACGCTACCAGGATGGGCTGGTCTGGCGTGCGCCCTCCGGCGATTACGTCTCTTTTCCTCTGGTGCCCAAA GGCCAGCGTACCTACTGCGAAGCGGAGAAACACTGGCTGGAACATCATCGGGACGACAGTTGGTCATTGTATGACATCAG CGGTGAGCGCTGGCATTTTATGCCCCTGCGCGATGATGCCCCTTCTCTTCCCCTCTGCCTGACCGAGCCCTGCGGCAATG AGATTCAGTTCGACTGGAACTCCGATCACACATTGGCCGCGCTGACAGACAGTGCCGGTCAGCGCGTAACCTGCCGCTAT GCGAATAACCGGCTCGCAGGTGCCTGGCTGGATGACGATATTTGTCTGGTCAGTTACGCTTATGATGATATCGGCCAACT CGTTACGGTAACGGGCCGGGGCGGTAGCGTGCGCCGACGCTTCCAGTGGTGCGATGGCCTGATGGTCGCCCATGAAGATA TGAATGGCCTGCTAAGTGAGTATCGCTGGCAGGAGATCGATGGCCTCCCAAGAGTGGTGGCCTTCCGTCACAGCGGCGGC GAGCAGCTGGATTTTGAGTACGATTTTGATAATGGCATCCGACGCGCGCGACGTGATGACGGCGTTGAAGCTCACTGGCT CATTGACGATGACGATCATGTCGCCCGCTTCACCGACTTCGACGGCCGCCAGACCATGCTGGTTTACTGCGCAGGCGAGT TGTGCGATGTGATTATGCCCGGCGGCGCCATGCGCTGCAGCAACTGGGACCGCTATGGTCGCATGACGCAGGAGATCGAT CCGGTCGGACGTCGAACCACTTATCACTGGTTCCGCATGACTGACCGTGTGATCCGTACGGACTATCCCGATCTGAGCGC GACTCAGGCGGCTTACGATCTTAATGTTCGCCTGCTGACTGAAACCGATGCGCTCAATAACGTCACCACCTATCACTACC CTGATGACACAGAACTGCTGCCAGACAGCATCACCGATGCAACGGGCGGCGTGGTGAAGCTGGAATGGAACCGACAAGGG CTGCTGACGCAGCGCACCGACTGCTCTGGCAGCGTAACGACGTTTAGCTACGACCGATTTGGCCAGCTTGTTCGCAGCGT GGATGCTGAAGGTCATGTCACCCAGCGCGAGTGGAATGACAAGGGACAACTCTGCGCCATTATCCATCCAGACGGCAGCC GGGAAACCCTGCACTGGAACACCCAGGGGCAGCTCAGTGCGTGGCGCGATCCGCTGGAGACCGAAGTCCGCTGGACCTAT AACGCACTCGGATTACCGGTGAGCCTGACGGACCGCATTGGTCGCACGCGTCGCTGGCATTACGATGCCCGTGGTAATCT GCTGCGGCTGGAAAACGGCAACGGCGGTGACTATCGCTTTACCTGCGATCCGCTCGGCCGTCCATTGAGTGAGATCCGGC CCGATAAGACCTCACGCAATATGGAATGGAATGCTCGTGGTTTTCTCATTGGTTTACAGGAAAATGGCCAGCCCGCTAAT GACGGTGGCATAGCCCGACGCTGGCAGCGCTTTAGCTACGACGACAGCGGCTTGATTACCCAGCGCACAACGCAGCATGC AGAATACCACTACCGGCGTCATCGTAGCGGTCAACTTGCCAGCCTGGTTCGCACGCCGACCAGTGACGGAATGGCGCTTG GTATCGAAGACGATGAAATCGCCTTTACCTATGACGTCGCAGGTCAGCTCTTAACAGAAGCCGGTATAAACGGGAAACTG GATTACGAATGGGATGCACTGGGCAACCTCACCCATCTGACCCTGCCGGGTGAACAGCAACTTGCCTGGCTGCACTACGG TTCGGGTCACGTCAGCGCGATTCGCTTTAATCAGCAACTGGTCAGTGAATTTACCCGCGACCGCCTGCACCGGGAAATTC GTCGCAGTCAGGGCGCGCGTGAGCAGGCGCGTCAGTACGACAGCCTTGGCAGGCGTACGATGCAGCGCAGTGAATTGCAT AGCGAGGTGGTGCTACCGGAAAAAGCCATTCTGGAACGCGCTTTCCGCTATTCGGCGCGCAGTGAACTGGAGTCTGTCAG TGATACGCTGCGCGGCGACATTATCTATGGTTACGATGATGAAGGCCGCCTGCTGAAGCACTACGAAGCCAGACAGGGCC ACAGCACCTCGCATTTTACTTACGATAATGCGGACAACCTGGCCGCCAACGACGATGCACTGCACGCGTTGCCGGTTACC GACAATCGAGTGCATCACTGGCAGAACCTGTTTATGAAGTACGATGACTGGGGCAACCTGGTCAGTCGACGCAGCGGCCT GCATGAGCAGCATTTTACCTATGACGCCGAAAACCGGCTCATCAGCGCCAAAGGCAATGGCCCGGACGGCGGGTTTACCG CGCATTATCATTATGATGCGCTGGGCAGGCGCACCTGCAAAGTGGTCAGCACCCAGCACGATCGTAAAGAAGTCCGTTTT CTGTGGCAGGGCTATCGCCTGTTACAGGAGCAACAGGATAATGGCCAGTGCCAGACCTATGTGTACGATCCCAACGAGGC CTGGAGCCCGCTGGCGCGCATCGACCATATGGCAGCAGGCGGCCGGGGCGATGTGCTGTGGTTTAACACCGATATTAACG GGGCACCGCTAGAGGTGACCGATGAACGGGGCAATATCCGCTGGAGCGGTCAGTACGGCAGCTTTGGCGAGGTACGCCGA CAGACGGAGGGCTTTACCCGGCTGGCAAAACAGTCTGCCCTGCCCCATCAGCCGCTGCGCTATGCGGGCCAGTATGCGGA CAGCGAAACCGGTCTACACTACAATCTGTTTCGCTATTACGATCCGCAGGTGGGACGGTTTACGGTTCAGGACCCGATAG GGCTGGAAGGCGGCTGGAACCTTTATCAGTATGCGCCGAACCCGCTGAGCTGGGTGGATCCGCTGGGGTTGAGTAATTGC GGTGCTCCAAACAAAAAGACATCTTATGAAGGTATCAGTCGCAGAGATGCGTTTAGGCAAGCTAAAAGGGATGCTGGAAT ACCAATGAATCAACATCCTAGCTCTATCACAAGACCCGACTTACTAGATGGGAGTGGTAAAAAAATATTAGATAGTACTG GGCAGCCAATAAAAACTAGGCAATACGAATTTGTTGACAAAAGAGGTCAGTCCGTCTTTCTACAAGAACATAGTTTAGGA CATACCAAGGCTACTTCTGGTCATGGAGCTGAACCTCATTTTAATCTTAGGCCTCTTGACAACTTGAATACCGGTTCAGT TCCTGGTACTCATGGTCACTATAATTTCCCATAA Protein sequence : MFEAARLGDDIGHSHALAGMIAGTIVGGLIAAAGGIAAGALMIAGIGASCLGVGVLLVGLSIGVGYLTGELATAARDGIA DAGAASMTPKGKITTGSPNVFINSKPAAMATNSIVACKDDGPQQMAEGSSRVYINGLPASRIDDRTTCDAKVMTGSDNVY IGGEPEQTLPIQPEVPEWVYKASDLTLLFAGLAGGVGGAAGKVGALGKLLSKIPGINKIARVACRAGALMTGVAAAGILA RPVDIVSGQKFLSGDDELDFVLPSRLPLRWQRYWRSGNPGDSVLGRGWNLFWETRLERYQDGLVWRAPSGDYVSFPLVPK GQRTYCEAEKHWLEHHRDDSWSLYDISGERWHFMPLRDDAPSLPLCLTEPCGNEIQFDWNSDHTLAALTDSAGQRVTCRY ANNRLAGAWLDDDICLVSYAYDDIGQLVTVTGRGGSVRRRFQWCDGLMVAHEDMNGLLSEYRWQEIDGLPRVVAFRHSGG EQLDFEYDFDNGIRRARRDDGVEAHWLIDDDDHVARFTDFDGRQTMLVYCAGELCDVIMPGGAMRCSNWDRYGRMTQEID PVGRRTTYHWFRMTDRVIRTDYPDLSATQAAYDLNVRLLTETDALNNVTTYHYPDDTELLPDSITDATGGVVKLEWNRQG LLTQRTDCSGSVTTFSYDRFGQLVRSVDAEGHVTQREWNDKGQLCAIIHPDGSRETLHWNTQGQLSAWRDPLETEVRWTY NALGLPVSLTDRIGRTRRWHYDARGNLLRLENGNGGDYRFTCDPLGRPLSEIRPDKTSRNMEWNARGFLIGLQENGQPAN DGGIARRWQRFSYDDSGLITQRTTQHAEYHYRRHRSGQLASLVRTPTSDGMALGIEDDEIAFTYDVAGQLLTEAGINGKL DYEWDALGNLTHLTLPGEQQLAWLHYGSGHVSAIRFNQQLVSEFTRDRLHREIRRSQGAREQARQYDSLGRRTMQRSELH SEVVLPEKAILERAFRYSARSELESVSDTLRGDIIYGYDDEGRLLKHYEARQGHSTSHFTYDNADNLAANDDALHALPVT DNRVHHWQNLFMKYDDWGNLVSRRSGLHEQHFTYDAENRLISAKGNGPDGGFTAHYHYDALGRRTCKVVSTQHDRKEVRF LWQGYRLLQEQQDNGQCQTYVYDPNEAWSPLARIDHMAAGGRGDVLWFNTDINGAPLEVTDERGNIRWSGQYGSFGEVRR QTEGFTRLAKQSALPHQPLRYAGQYADSETGLHYNLFRYYDPQVGRFTVQDPIGLEGGWNLYQYAPNPLSWVDPLGLSNC GAPNKKTSYEGISRRDAFRQAKRDAGIPMNQHPSSITRPDLLDGSGKKILDSTGQPIKTRQYEFVDKRGQSVFLQEHSLG HTKATSGHGAEPHFNLRPLDNLNTGSVPGTHGHYNFP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api89 | CAF28563.1 | putative membrane-bound sugar-binding protein | Not tested | YAPI | Protein | 0.0 | 45 |
| YpsIP31758_3692 | YP_001402646.1 | RHS/YD repeat-containing protein | Not tested | YAPI | Protein | 0.0 | 44 |
