Gene Information

Name : pagC (PANA_0103)
Accession : YP_003518398.1
Strain : Pantoea ananatis LMG 20103
Genome accession: NC_013956
Putative virulence/resistance : Virulence
Product : PagC
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG3637
EC number : -
Position : 111725 - 112285 bp
Length : 561 bp
Strand : +
Note : Virulence membrane protein PagC precursor; Similar to Edwardsiella tarda EIB202, putative virulence-related membrane protein (NCBI: YP_003295691.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Outer Mem

DNA sequence : 
ATGAACAAGGTGATTATTTCCGCTATTTTCTGTGCGCTGCTGAGTGGTGCGGTGCCCGCAGTGGCAAGTCAAACGCTGTC
TGTAGGCTATGCGCAGAGTAAAGTTGAAGATTTTAAAAATATGCCCGGTGTGAATCTGCAATATCGTTATGAGTGGGACT
CGCCGGTTAGCGTAGTGGCCTCTTTCACCACTCTGGAGAACAGTGAGGACAGCAACAGTTCTTTTTTTCAGCGCCATACG
TCCGATCACGTAAGCGCAAAATATTATTCTTTACTGGCGGGGCCGGCATATCGTCTGAATCAACGGGTCAGTGTTTATGC
GCAGGCCGGCTTTTCCCATGCCGCGATGAGCCGCCAGTATCACGGCTATGATTCTCAGGGAATGCCTCAGGACATCCAGT
TTTCGGAGACGACCAATGCGTTGGCTTACGGGGCCGGTATTATCATTAACCCGGTTGATTATCTGTCTGTAACCATGGGT
TACGAAGGTTCCCGCACCCGGGTTGAAGGAGAGCAACGCGCTGTTAACGGCGTTAATCTGGGGGTGGGTTACCGTTTCTG
A

Protein sequence : 
MNKVIISAIFCALLSGAVPAVASQTLSVGYAQSKVEDFKNMPGVNLQYRYEWDSPVSVVASFTTLENSEDSNSSFFQRHT
SDHVSAKYYSLLAGPAYRLNQRVSVYAQAGFSHAAMSRQYHGYDSQGMPQDIQFSETTNALAYGAGIIINPVDYLSVTMG
YEGSRTRVEGEQRAVNGVNLGVGYRF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4321 NP_289546.1 PagC-like membrane protein Not tested OI-122 Protein 3e-29 47
unnamed ADD91732.1 putative PagC-like membrane protein Not tested PAI-I AL862 Protein 2e-29 46
Z4321 AAQ19134.1 putative PagC-like membrane protein Not tested PAI I CL3 Protein 1e-28 46
pagC AGI37348.1 PagC Virulence OI-122 Protein 5e-21 45
pagC AGI37351.1 PagC Virulence OI-122 Protein 3e-21 45
pagC AGI37349.1 PagC Virulence OI-122 Protein 3e-20 43
pagC AGI37347.1 PagC Virulence OI-122 Protein 6e-21 43
pagC AGI37352.1 PagC Virulence OI-122 Protein 3e-20 43
pagC AGI37337.1 PagC Virulence OI-122 Protein 2e-20 43
pagC AGI37342.1 PagC Virulence OI-122 Protein 2e-20 43
pagC AGI37344.1 PagC Virulence OI-122 Protein 2e-20 43
pagC AGI37346.1 PagC Virulence OI-122 Protein 2e-20 43
pagC AGI37350.1 PagC Virulence OI-122 Protein 2e-20 43
pagC AGI37341.1 PagC Virulence OI-122 Protein 3e-20 43
pagC AGI37340.1 PagC Virulence OI-122 Protein 6e-21 43
pagC AGI37343.1 PagC Virulence OI-122 Protein 5e-20 42
pagC AGI37353.1 PagC Virulence OI-122 Protein 5e-20 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pagC YP_003518398.1 PagC VFG0442 Protein 3e-20 41