|
Name : ureB (HMU03060) Accession : YP_003516311.1 Strain : Helicobacter mustelae 12198 Genome accession: NC_013949 Putative virulence/resistance : Virulence Product : urease subunit alpha Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG0804 EC number : 3.5.1.5 Position : 365521 - 367230 bp Length : 1710 bp Strand : + Note : evidence=ISS; db_xref=pmirabilis:PMI3685; date=20070321; method=automatic:reciprocal fasta DNA sequence : ATGATTAAGATTTCAAGAAAAGAATATGTTTCAATGTATGGACCAACCACAGGAGATAAAGTAAGACTTGGAGACACAGA ACTCATCGCAGAAATCGAAAAAGACTATACAGTTTATGGAGAAGAGATCAAGTTTGGTGGTGGTAAGACCATCCGCGATG GTATGTCACAATCTGTGAGTCCCGATGTAAATGAACTCGATGCAGTGATCACAAATGCAATGATCATTGACTATACAGGA ATTTACAAAGCAGACATCGGCATCAAAGATGGCAAGATCGCAGGAATTGGCAAAGCAGGAAACAGAGATACGCAAGATGG TGTGGGCATGGATTTGGTCGTAGGTGCTAGCACAGAAGCAATCGCGGGTGAAGGTTTGATTGTCACAGCTGGTGGAATTG ACACTCATATTCACTTTATTTCTCCTACACAAATTCCCACAGCACTTTATAGTGGTGTCACTACAATGATTGGTGGTGGT ACAGGTCCTGCGGCAGGTACTTTTGCAACTACGATTTCTCCTGGTGAGTGGAATATCAAACAAATGATTCGCGCTGCTGA GGAATACACCATGAATCTTGGATTTTTTGGTAAGGGCAATACATCTAATGTAAAAGCGCTTGAGGATCAAATCAAAGCAG GTGCGCTAGGATTTAAGGTACATGAGGACTGGGGCTCCACTCCTGCTGTAATCAATCATTCTCTCAATATTGCAGAGAAA TATGATGTACAAGTTGCCATCCACACAGATACGCTCAATGAGGGAGGTGCTGTGGAAGATACGTTAGCAGCAATCGGTGG TAGAACTATCCACACTTTCCATACAGAAGGCGCAGGCGGTGGACATGCTCCAGATATTATTAAGGCAGCAGGAGAGGCGA ATATTTTGCCAGCTTCTACCAATCCTACAATTCCTTTCACAAAGAATACAAAAGATGAGCACTTGGATATGTTGATGGTT TGCCACCATTTGGACAAAAACATCAAAGAAGACGTTGCGTTTGCAGATAGCCGTATCCGCCCTGAAACCATCGCAGCAGA AGATGCTTTGCATGATATGGGGATTTTCTCTATCACTAGCTCTGACTCTCAGGCGATGGGACGCGTAGGAGAGGTAATTA CTAGAACTTGGCAGGTGGCAGATAAATCCAAAAAAGAATTTGGTCGCTTGAAAGAAGAGACTGGTGATAATGACAATTTT AGAATCAAGCGCTATGTTTCTAAGTACACCATTAATCCAGCCATTGCGCATGGAATCTCTGATTATATCGGATCTGTAGA AAAGGGTAAAATCGCAGATTTGGTTTTGTGGGATCCAGGTCTTTTTGGAATCAAGCCTGAGACAATCATCAAAGGCGGTA TGATTGTTGCATCCAAAATGGGAGATTCCAATGCTTCTATCCCAACTCCAGAGCCTGTAGTGTACAAAGATATGTTTGGC GCGCATGGAAAGGCAAAGTATAAGTGCAATGTGACTTTTGTCTCTCAGGCTTCCCTAGATCTTGGAATCAAAGAAGAATT GGGGCTTGAGCGAACATTGCTGCCAGTGAAGAATTGCAGAAACATTGGGAAAAGAGATATGAAGTTTAATGATGTTGTCG CACATATTGACGTGAATCCAGAGACCTACAAAGTTAAAGTAAATGGCAAAGAGGTTACATCTAAGTCTGCAGATAGTGTA CCACTAAGTCAGCTTTATAATTTGTTTTAA Protein sequence : MIKISRKEYVSMYGPTTGDKVRLGDTELIAEIEKDYTVYGEEIKFGGGKTIRDGMSQSVSPDVNELDAVITNAMIIDYTG IYKADIGIKDGKIAGIGKAGNRDTQDGVGMDLVVGASTEAIAGEGLIVTAGGIDTHIHFISPTQIPTALYSGVTTMIGGG TGPAAGTFATTISPGEWNIKQMIRAAEEYTMNLGFFGKGNTSNVKALEDQIKAGALGFKVHEDWGSTPAVINHSLNIAEK YDVQVAIHTDTLNEGGAVEDTLAAIGGRTIHTFHTEGAGGGHAPDIIKAAGEANILPASTNPTIPFTKNTKDEHLDMLMV CHHLDKNIKEDVAFADSRIRPETIAAEDALHDMGIFSITSSDSQAMGRVGEVITRTWQVADKSKKEFGRLKEETGDNDNF RIKRYVSKYTINPAIAHGISDYIGSVEKGKIADLVLWDPGLFGIKPETIIKGGMIVASKMGDSNASIPTPEPVVYKDMFG AHGKAKYKCNVTFVSQASLDLGIKEELGLERTLLPVKNCRNIGKRDMKFNDVVAHIDVNPETYKVKVNGKEVTSKSADSV PLSQLYNLF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ureC | NP_287088.1 | urease subunit alpha | Not tested | TAI | Protein | 2e-155 | 63 |
| ureC | NP_286680.1 | urease subunit alpha | Virulence | TAI | Protein | 2e-155 | 63 |
| ureC | YP_005684266.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 2e-147 | 60 |
| ureC | YP_005682174.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 3e-147 | 60 |
| ureC | YP_003784325.1 | urease subunit alpha | Not tested | PiCp 7 | Protein | 3e-147 | 60 |
| ureC | YP_005686358.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 3e-147 | 60 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ureB | YP_003516311.1 | urease subunit alpha | VFG0270 | Protein | 0.0 | 79 |
