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Name : serS (HMU02720) Accession : YP_003516279.1 Strain : Helicobacter mustelae 12198 Genome accession: NC_013949 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 323784 - 325082 bp Length : 1299 bp Strand : + Note : evidence=ISS; db_xref=cjejuni:Cj0389; date=20070321; method=automatic:reciprocal fasta DNA sequence : ATGATTGATGTGAGGTTGTTGGTAAGTGATTTTGATGCAGTGAGTCAGAAATTGCAGAAGAAAAAAGTAGGGGCTGTTTT GCTACAGGATTTAAAGGCGCGTGCGCAGGAATACAAAAGCGCCAAACAAGGGCTAGAAACCCTGCAAGCAGAGCAGAATA AGAACTCCAAGATTTTTGGCTCTTTGATGGCACAAAAAGATTCCCAAAATTCCAGCGAAGTAGAAAATCTCAAAGCAAGG CTAAACCAGCAAAAAAAAGAGATTTCTCAAGCTATGGAAGTTATGAGAATGAAGCAAGAGGCATTAGAAGAGCTGCTTTA TGTCATTCCCAACATCCCTGATGAAAAAACCCCAAGAGGAGAGGATGAGAGGGAGAATCTTGAGCTTAGCAAAATCCTTG AGCCAAGAGCCTTTGATTTTATCCCCAAGGAGCATTGGGAATTAGCCCAACAAAATGGCTGGATTGATTTTGAGCGGGGC GTAAAGCTTGCTAAGAGTCGCTTTTCTGTGTTGCGTGGCATGGGTGCAAGACTCAATCGCGCACTCATTAATTTCATGCT GGATTGCAATCAAAAAGCAGGATTTGAGCTGGTTTCAGCCCCTGTGATTGTCAATGAAAAGATGCTTTTTGGCACCGGAC AGTTGCCAAAATTTGCAGAAGATATGTTTCGCATCGATGGCAATATGGATCCGCTTCATGTCGGAGAGGAAGAAGAAAAA CAAGATCTCTATCTCATCTCCACGTCAGAGATCACGCTTACAAATCTCTATTATGATGAGATTCTCCAAGCAGAGGATTT GCCTCTTTTGCTCACTACACAAACTCCTTGCTTTCGCAAAGAAGCAGGGAGTGCAGGGAGGGATACCAGAGGCATGATCC GCCAGCACCAATTTGATAAGGTAGAATTGGTTGCCATCACAAAGCCTGAGCAAAGTGATGCAATCCAGCAGAAAATGATA GATACAGCAAGCGGGATTTTGCGTACACTGGGGCTTCCTCATCGCCTAGTCCAGCTTTGTGGCGGGGATTTGGGATTTTG TGCGAGCAATACTGTAGATCTTGAAGTATGGCTGCCAGGGCAGAATTGCTATCGAGAAATCAGCTCCATTAGCAACACCA GGGATTTTCAGGCGCGCAGAGCAAAAATCCGATACAAAGAGGACAAAAAAAATCACCTTGTACACACGCTCAATGGCTCC TCTCTGGCTGTGGGGCGCACGCTCATTGCCATTATGGAGAATTATCAAAACAAAGATGGCAGCATCACCATCCCAGAGGC ACTCAAGCCTTATTTGTGA Protein sequence : MIDVRLLVSDFDAVSQKLQKKKVGAVLLQDLKARAQEYKSAKQGLETLQAEQNKNSKIFGSLMAQKDSQNSSEVENLKAR LNQQKKEISQAMEVMRMKQEALEELLYVIPNIPDEKTPRGEDERENLELSKILEPRAFDFIPKEHWELAQQNGWIDFERG VKLAKSRFSVLRGMGARLNRALINFMLDCNQKAGFELVSAPVIVNEKMLFGTGQLPKFAEDMFRIDGNMDPLHVGEEEEK QDLYLISTSEITLTNLYYDEILQAEDLPLLLTTQTPCFRKEAGSAGRDTRGMIRQHQFDKVELVAITKPEQSDAIQQKMI DTASGILRTLGLPHRLVQLCGGDLGFCASNTVDLEVWLPGQNCYREISSISNTRDFQARRAKIRYKEDKKNHLVHTLNGS SLAVGRTLIAIMENYQNKDGSITIPEALKPYL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 8e-88 | 47 |
