Gene Information

Name : fliP (HMU02400)
Accession : YP_003516248.1
Strain : Helicobacter mustelae 12198
Genome accession: NC_013949
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 289928 - 290671 bp
Length : 744 bp
Strand : +
Note : -

DNA sequence : 
TTGAAGTTAAGCAGGGTGATTGGGCTATTTTTTTGCATAGGTTTTGCGTATTCCATCGCTGCAGCGCCAACCATCCCCAC
GGTCAATCTATCCCTCACCGCCCCTGATACTCCCAAGCAGCTTGTCACCACGCTCAATGTCATCATCGTATTGACACTCT
TAGTGCTTGCTCCCTCTCTGGTGCTTGTTATGACAAGTTTTACGCGGCTGGTTATTGTATTTTCTTTTTTGCGCACGGCC
CTAGGCACGCAGCAATCCCCTCCTACTCAGATTTTGGTGTCTTTGGCTATGGTGTTGACTTTTTTTATTATGGAGCCTGT
GGTGAGGGAATCTTATCAAAAAGCCATTGTGCCCTATTTGGATGCGAAAATCTCCTATGAAACTGCGTTTGATAGGGGTG
TGCAGCCCTTTAAGGATTTCATGCTCAAAAACACAAGAGAGAAGGATTTAGCACTTTTTTATCGGATTCGCAAACTTGAA
AATCCCAAAACCTCAGCAGATGTATCTCTCACCACGCTCATCCCTGCTTTTATGATTAGTGAGCTAAAGACAGCATTTCA
GATTGGCTTTTTGCTCTACTTACCATTTTTGGTCATTGATATGGTCGTAAGCTCTATCTTAATGGCGATGGGGATGATGA
TGCTACCCCCAGTGATGATTTCTCTGCCCTTTAAGATCTTGATTTTTGTGCTTGTGGATGGATTTAATCTTTTAATTGGA
AATTTAGTGGAGAGTTTTAAATGA

Protein sequence : 
MKLSRVIGLFFCIGFAYSIAAAPTIPTVNLSLTAPDTPKQLVTTLNVIIVLTLLVLAPSLVLVMTSFTRLVIVFSFLRTA
LGTQQSPPTQILVSLAMVLTFFIMEPVVRESYQKAIVPYLDAKISYETAFDRGVQPFKDFMLKNTREKDLALFYRIRKLE
NPKTSADVSLTTLIPAFMISELKTAFQIGFLLYLPFLVIDMVVSSILMAMGMMMLPPVMISLPFKILIFVLVDGFNLLIG
NLVESFK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-24 45
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-24 45
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 6e-26 44
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 5e-25 44
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 5e-25 44
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 8e-26 44
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 8e-26 44
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-24 44
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 4e-27 43
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 6e-27 43
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 6e-27 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 3e-27 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 3e-27 43
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-27 43
lscR AAO18040.1 LscR Virulence TTSS locus Protein 6e-24 43
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-26 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-26 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-23 42
escR AAC38369.1 EscR Virulence LEE Protein 4e-23 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-23 42
escR AAK26700.1 EscR Virulence LEE Protein 8e-24 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-23 42
escR AAL57527.1 EscR Virulence LEE Protein 8e-24 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 8e-24 42
escR CAI43889.1 EscR protein Virulence LEE Protein 8e-24 42
escR AAC31528.1 L0049 Virulence LEE Protein 8e-24 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-23 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 8e-24 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-23 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-19 41
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-19 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-19 41
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-18 41
unnamed AAL06354.1 EscR Virulence LEE Protein 7e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_003516248.1 flagellar biosynthesis protein VFG2338 Protein 6e-42 57
fliP YP_003516248.1 flagellar biosynthesis protein VFG2494 Protein 2e-43 56
fliP YP_003516248.1 flagellar biosynthesis protein VFG1259 Protein 6e-40 56
fliP YP_003516248.1 flagellar biosynthesis protein VFG2016 Protein 2e-39 53
fliP YP_003516248.1 flagellar biosynthesis protein VFG0394 Protein 9e-25 46
fliP YP_003516248.1 flagellar biosynthesis protein VFG0519 Protein 4e-26 44
fliP YP_003516248.1 flagellar biosynthesis protein VFG0188 Protein 2e-25 43
fliP YP_003516248.1 flagellar biosynthesis protein VFG0044 Protein 4e-25 42
fliP YP_003516248.1 flagellar biosynthesis protein VFG0715 Protein 2e-23 42
fliP YP_003516248.1 flagellar biosynthesis protein VFG0827 Protein 4e-24 42