|
Name : lysS (HMU11190) Accession : YP_003517099.1 Strain : Helicobacter mustelae 12198 Genome accession: NC_013949 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1240529 - 1242037 bp Length : 1509 bp Strand : + Note : evidence=ISS; db_xref=cjejuni:Cj0401; date=20070321; method=automatic:reciprocal fasta DNA sequence : ATGTTTGAAAATCAATACATCCAGCAACGTCTCCAAAAAGCACAGATTTTGCGCGAAAATGGGCAAAATCCCTATTCCAA TCAAACCCAAAAAACCATCAAAAATAGCGAATTTATTGAGCGTTTCTCCTATCTCAAAAATCAAGAAAACAACAAAGAAA CCGAGCAAAAATTCTCCATTACAGGACGTGTAAAACTGCTTAGAATGATGGGAAAGGCTTGCTTCATTGACATCGAGGAT GAAAGCGCCAATGTACAGGTCTATGTCTCACAAAATGATTTGCAAGAGCAATTTCTTCTCTTAAAAAAAACCCTAGAGGT GGGAGATTTCATCTCTGTGTATGGTTATCCCTTTGTCACCAAAACAGGCGAGCTGAGCCTGCATGCAATAAAATACCAGC TTCTTACAAAATCCATCATCCCACTGCCTGAGAAATTCCACGGGATCACAGATATCGAATTGCGCTATCGTCAACGCTAT CTTGATCTCATCATGAACAAAGAAGTAAAAGAAACCTTTAAGTTGCGCAGCAAGATCGTCTCTGCTGTGCGCAGATTTTT TGAATCCAAGGGATTTTTGGAAGTGGAGACCCCAATGCTTCACCCAATCCCAGGAGGGGCAAATGCCAGACCCTTCATCA CGCATCACAATGCTCTAAATGTGGATAGATTTTTGCGTATCGCCCCAGAGCTCTATCTCAAACGCCTGATTGTAGGAGGC TTTGAAGCAGTATTTGAGATGAATCGAAATTTCAGAAATGAAGGCATGGATCATTCTCATAATCCAGAATTTACCATGAT TGAATTTTATTGGGCATACAAGACTTACAAAGACCTCATTGTTCTCACAAAAGAGTTTTTTACCTATCTTTTAGATACTT TAGGTTTACCCACCAAAATCCACTACAATGACCAAGAAATTGATTTTTCTGATTTTAAAGTGATTGGCTACAAAGATGCG CTAGAAAAAATTGGAAATTTGCCCCGTGCGGTCCTTGAAGATAAACATTCCCTGCGGGATTTTTTGCAAAAACAAGGCAT CAAGCTAGAAGCCCAGATGGGTTATGGCAAGCTTTTGAGCGAAGCCTTTGATACATTTGTCGAGCACAAGCTCATTCATC CAACCTTCATCACAGACTATCCCATTGATATCAGCCCGCTAGCCAGGAGAAATGATCAAAATCCCCAAATTGCCGATCGC TTTGAGTTGTTTATCGGAGGCAAAGAGATCTCCAATGGATTTAGCGAGCTCAATGACCCCATCGATCAATTTGAACGCTT TAAGCAGCAGGTCAGAGAAAAGGATGCAGGCGATGAAGAGGCCCAGTATATGGATGAAGATTATGTATGGGCACTTGGAT ATGGAATGCCTCCCACAGCAGGGCAAGGCATCGGGATTGATCGCTTGATCATGCTTTTTACCGGGGCCAAAACCATTAAA GATGTGATTTTATTCCCTGCAATGAAGCCTACAAGAAATCATTTTGAACCAAATGAACAAAATAGCTGA Protein sequence : MFENQYIQQRLQKAQILRENGQNPYSNQTQKTIKNSEFIERFSYLKNQENNKETEQKFSITGRVKLLRMMGKACFIDIED ESANVQVYVSQNDLQEQFLLLKKTLEVGDFISVYGYPFVTKTGELSLHAIKYQLLTKSIIPLPEKFHGITDIELRYRQRY LDLIMNKEVKETFKLRSKIVSAVRRFFESKGFLEVETPMLHPIPGGANARPFITHHNALNVDRFLRIAPELYLKRLIVGG FEAVFEMNRNFRNEGMDHSHNPEFTMIEFYWAYKTYKDLIVLTKEFFTYLLDTLGLPTKIHYNDQEIDFSDFKVIGYKDA LEKIGNLPRAVLEDKHSLRDFLQKQGIKLEAQMGYGKLLSEAFDTFVEHKLIHPTFITDYPIDISPLARRNDQNPQIADR FELFIGGKEISNGFSELNDPIDQFERFKQQVREKDAGDEEAQYMDEDYVWALGYGMPPTAGQGIGIDRLIMLFTGAKTIK DVILFPAMKPTRNHFEPNEQNS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-112 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_003517099.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 6e-113 | 52 |
