Gene Information

Name : Snas_0064 (Snas_0064)
Accession : YP_003508879.1
Strain : Stackebrandtia nassauensis DSM 44728
Genome accession: NC_013947
Putative virulence/resistance : Unknown
Product : lysyl-tRNA synthetase
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG1190
EC number : -
Position : 68185 - 71487 bp
Length : 3303 bp
Strand : -
Note : TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); protein of unknown function DUF472; protein of unknown function DUF471; protein of unknown function DUF470; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: xoo:XOO2872 lysy

DNA sequence :
ATGACGACGGTGAACAAGTCCGCGCCGGGTGGTTGGCGCGCCCGCATACCCACGGTGCTGGCCACGCTGATGGCGCTGTT
GACCCTGATCGTGGCGCTGGCCGCGGTCGCCAGCGCGTTCCGCGACCGCACCGTCAAGGTGCGCGAGTTCGTCGAGATGG
TGCTGATCCCGGCGCCACCGAACCTCGCCTATGCGGCCTTCCTGGCGATCTTCGCCGCCGCTGTCGCCCGCCGCAAACGG
CTGGCCTGGTGGATCCTGGTCGGCTACTTCTCGCTCACGCTGGTGCTGCTGGCGCTGCTGAACACGATCGTGATCCTGGC
ACCCGCGTTCGTGTTCGCCGACCCCGCTTCCGTTGAGGACACCCCCGGTTACGTGGTGCCCCGGCTGGTGCTGGCCACGT
TCATCGCGATCGTCTTGCTGGTGCTGCTGCTGGTGGGCCGCTCGCAGTTCCCGGCCCGGGTGGGGCGCGGCAGCCTGTGG
AAGGCGATCGGGGTGCTGGCCGCGCTGATGGCGATGTTCGTGCTCATCGGCTGGGGCCTGGTGTCGATGTTCCCCGGCAC
GGTCACACACGGCGACCGGTTCCAGTACACCTTCGACAAGGTCGTCGGTGGGGCGCTGCGGTTCGAGATGACCCGCAGCG
GCGTGGCACCCGGCTGGATCGACCTGCTGCTGGGCGCGTTCGGCGCGGTGGCGCTGCTGGCGGCGCTGTTCACGCTGTTC
AAGTCGCAGCGGCTGGCCGCCGCCATGAACGCCTGGGACGAGGTGCGGCTGCGGGTGCTGCTGGCCGCACACGGCGAGGA
CGACTCGCTGGGCTACTTCGCGACCCGGCGCGACAAGGCGGTGATCTACGCGCCCGGCGAGACCGCGGCGGTCACCTACC
GCACCGTCACCGGCGTCTGTCTGGCCTCAGGCGACCCGATCGGCGACCCCGCCGACTGGCCGAAGGCCATCGATGCCTGG
CTGCGGCAGGCGCGCGGCCACGGCTGGGTGCCCGCGGTGCTGGGCGCCAGCGAGGCGGGCGCCACCGCGTACCGGCAGGC
GGGCCTGCGGGTGCGCGAGATCGGCGACGAGGCGATCCTGCTGCCCCGCGAGTACACACTAGACGGACGCGAGATGCGCC
CGGTCCGGCAGGCGGTGGCGCGCATCGAACGGGCGGGCTACACCGCCCGGATCCGCCGCCACGGCGAACTGTCCGCATCG
GAGATGGCCGCGGCGATCAAACGCGCCGACGACTGGCGCGACACCAAGACCGAACGCGGCTTCTCGATGGCGCTGTCCCG
GTTCGGCGACGCCGACGACGCCGACAACGTGCTGGTCGAGGCCATCGACGGGATCGGCAAGGTGCGGGCCATGCTGTCCT
TCGTGCCCTGGGGCCGCCGGGGCCTGTCGCTGGACCTGATGCGCCGGGAACGCGACGCCGACAACGGCCTGATGGAGTTC
ATGGTCACCTCGCTGTGCCGCGAGGCCGGACGCCTGGGCGTGGACCGGATCTCGCTCAACTTCGCCATGTTCCGCGCCGT
CTTCGAGGAGGGCGCCCGCATCGGCGCCGGACCGATCCTGCGCTGGTGGCGGCGTCTGTTGACCTTCTTCTCCCGCTGGT
GGCAACTGGAGTCGCTGTACCGCTCCAACGTCAAATACCGTCCCCATTGGGCACCCCGCTACCTGTGTTACGGCGAACGC
CGGGCACTGGGCCGGGTCGGGCTGGCCGCCGCGGTCGCCGAGGGCTTCCTGTCGGCCGACATCTCCCGGGTCTCCATCGG
ACGGGCGGCCCGCGCCAAACCGCTGCCCGGCCTGGCCGAGGCACTCGCCGAAGCAGCCACCACCCCGACCGTCGACCCCA
GAACCCGCCTGCCCGAACAGATGCGGGTCCGGCTGGACAAACTGGACCGACTGCGCGACGCCGGGGTCGAACCGTACCCG
GTGGGCTTCGAACGGACCCTGGCCTGCGGCCAGGTCGCCCGCGACTTCCCGGACCTGCCGCCCGACGCCAACACCGGACG
CTTCGTCGCGGTCGCCGGACGGGTGATGCTGCTGCGCCACCACGGGAAACTGTCCTTCGCGACCATAAGGGACTGGACCG
GCGACCTCCAGGTCATGGTCGTCGGCGACTCTGACTTCCGCCACACCGTCGACATCGGCGACCACCTGGGCGTCGAAGGC
GAGGTCGTCACCTCCAAACGCGGCGAACTGTCGGTGCTGTCGAAGAAGTGGACCCTGACCGCCAAGTGCCTGCACCCGTT
GCCGGACAAGCACCTCGGCCTGGCCGACCCGGAGGCCAAGGTGCGGCAGCGTCACCTCGACCTCATCGTCAGCCCCCAGG
CCCGCACCGACCTGCGAGCCCGCGGCGCCGTCATCCACTCACTGCGGACCGGCCTGCACGACGACGGGTACCTGGAGGTC
GAGACCCCGATCCTGCAGGCGATCCACGGCGGGGCCAACGCCCGTCCGTTCGTCACCCACATCAACGCGTACGACATGCG
GCTGTACCTGCGCATCGCGCCCGAGTTGTACCTCAAGCGACTGTGCGTCGGCGGCGTCGAGAAGGTCTTCGAACTCGGCC
GGACGTTCCGCAACGAGGGCGTCTCGTTCAAGCACAACCCCGAGTTCACGATGCTGGAGGCGTACCAGTCCTACGCGGAC
TACAACACGATGCGCGAGCTCACGATGCGACTGGTCCGCCAAGCCGCCGTCGCGGCCTTCGATACCACGGTCATCACCCG
CGACGACCACGAGATCGACCTGGCCGCCGACTGGCCCGTCATCCCGATCCACCAAGCCATCTCCACCGCCCTCGGCGAGC
ACATCGACCCGGGCACACCCCGCGACAAGCTCCGTCAGCTGTGCGAGGCGGCCGACATCCCCCTAGATCCACAATGGGAC
GAGGGCGCCATCGTCCTCGAGATGTACGAGCGCCTGGTAGAACACGCCACCACCGCCCCAACGTTCTACAGCGACTTCCC
CACCTCGGTCTCCCCGCTCACCCGCCAACACCGCACCGACCCGCGCCTGGCGGAACGCTGGGACCTGGTCGCGTTCGGCA
CCGAGATCGGCACGGCCTACTCCGAACTGATCGACCCCGTCGAGCAGCGCCGCCGCCTCACCGAACAGTCGCTACTGGCA
GCGGGCGGCGACCCGGAGGCAATGGAGCTCGACGAGGACTTCCTGGCCGCGCTCGAATACGCGATGCCCCCCACGGGCGG
CCTCGGCATCGGCGTCGACCGGCTCGTCATGCTGCTGACCGGCAACGGCATCCGACAAACGCTGCCCTTCCCGCTGGTGA
AACCCACAGTGGACCAGCCATGA

Protein sequence :
MTTVNKSAPGGWRARIPTVLATLMALLTLIVALAAVASAFRDRTVKVREFVEMVLIPAPPNLAYAAFLAIFAAAVARRKR
LAWWILVGYFSLTLVLLALLNTIVILAPAFVFADPASVEDTPGYVVPRLVLATFIAIVLLVLLLVGRSQFPARVGRGSLW
KAIGVLAALMAMFVLIGWGLVSMFPGTVTHGDRFQYTFDKVVGGALRFEMTRSGVAPGWIDLLLGAFGAVALLAALFTLF
KSQRLAAAMNAWDEVRLRVLLAAHGEDDSLGYFATRRDKAVIYAPGETAAVTYRTVTGVCLASGDPIGDPADWPKAIDAW
LRQARGHGWVPAVLGASEAGATAYRQAGLRVREIGDEAILLPREYTLDGREMRPVRQAVARIERAGYTARIRRHGELSAS
EMAAAIKRADDWRDTKTERGFSMALSRFGDADDADNVLVEAIDGIGKVRAMLSFVPWGRRGLSLDLMRRERDADNGLMEF
MVTSLCREAGRLGVDRISLNFAMFRAVFEEGARIGAGPILRWWRRLLTFFSRWWQLESLYRSNVKYRPHWAPRYLCYGER
RALGRVGLAAAVAEGFLSADISRVSIGRAARAKPLPGLAEALAEAATTPTVDPRTRLPEQMRVRLDKLDRLRDAGVEPYP
VGFERTLACGQVARDFPDLPPDANTGRFVAVAGRVMLLRHHGKLSFATIRDWTGDLQVMVVGDSDFRHTVDIGDHLGVEG
EVVTSKRGELSVLSKKWTLTAKCLHPLPDKHLGLADPEAKVRQRHLDLIVSPQARTDLRARGAVIHSLRTGLHDDGYLEV
ETPILQAIHGGANARPFVTHINAYDMRLYLRIAPELYLKRLCVGGVEKVFELGRTFRNEGVSFKHNPEFTMLEAYQSYAD
YNTMRELTMRLVRQAAVAAFDTTVITRDDHEIDLAADWPVIPIHQAISTALGEHIDPGTPRDKLRQLCEAADIPLDPQWD
EGAIVLEMYERLVEHATTAPTFYSDFPTSVSPLTRQHRTDPRLAERWDLVAFGTEIGTAYSELIDPVEQRRRLTEQSLLA
AGGDPEAMELDEDFLAALEYAMPPTGGLGIGVDRLVMLLTGNGIRQTLPFPLVKPTVDQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lysS1 YP_005686365.1 lysyl-tRNA synthetase Not tested PiCp 7 Protein 2e-162 46
lysS1 YP_005682181.1 lysyl-tRNA synthetase Not tested PiCp 7 Protein 6e-162 46
lysS1 YP_005684273.1 lysyl-tRNA synthetase Not tested PiCp 7 Protein 2e-162 46
lysX YP_003784331.1 lysyl-tRNA synthetase Not tested PiCp 7 Protein 2e-162 46