Gene Information

Name : Snas_5334 (Snas_5334)
Accession : YP_003514061.1
Strain : Stackebrandtia nassauensis DSM 44728
Genome accession: NC_013947
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 5663245 - 5664102 bp
Length : 858 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cvi:CV_2234 enterobactin-iron transport system ATP-binding protein

DNA sequence : 
GTGAAATCCGCATCGGACACACCCCGGCTGGCGACCGACGGCCTGCGGCTGGCCTACCAGCGGCGGATCGTCATCGACGA
CCTCGACCTGGAAGTGCCACAGGGGAAGATCACCGTCATCGTGGGCCCCAACGCCTGCGGCAAGTCGACGCTGCTGCACG
GGATGGCCCGGCTGCACCCGCCCGGCGCCGGCAAGGTGATCTTGGACGGACGGTCCATCCACAGTACTCCGACGCGGCAG
GTGGCCCGCAAACTCGGGCTGTTGCCGCAGTCGCCGCAGGCACCCGAGGGACTGACCGTCGTCGACCTGGTCGGCCGGGG
CCGCGCTCCGCACCAGTCCTGGTGGCGACAGTGGTCGGCGGCCGACGAACAGGCGGTGGACGAGGCGCTGCGGGTCACCG
ACATGACCGACCTGGCGCAGCGTCCGGTCGACGAACTGTCCGGCGGTCAACGGCAGCGCGCCTGGATCGCGATGGCGGTG
GCGCAGCAGACGCCGATCATGCTGCTGGACGAACCCACCACGTTCCTGGACCTGGCGCACCAGATCGACGTCCTGGACCT
GATCTTCGAGCTCAACCGGACCGACGGGCGCACCATCGTCATGGTGCTGCACGACCTCAACCAGGCCAGCCGCTACGCCG
ACCACATGATCGTCATGAAGGCCGGACTGGTCATGGCCGCCGGGCAACCGTCCGAAGTGATCTCGGCGGAGCTGGTGGAG
GAGACCTTCGGGGTGCCGTGCGAGATCACCGTCGACCCGGTCAGCGACACGCCGCTGGTGATCCCGGCGGGGCGGCATCA
CCGTGCAAGCCAACCGATCGCTGACTTAACGCGGCGCCGAGCGCCCGCAGCAGCGTGA

Protein sequence : 
MKSASDTPRLATDGLRLAYQRRIVIDDLDLEVPQGKITVIVGPNACGKSTLLHGMARLHPPGAGKVILDGRSIHSTPTRQ
VARKLGLLPQSPQAPEGLTVVDLVGRGRAPHQSWWRQWSAADEQAVDEALRVTDMTDLAQRPVDELSGGQRQRAWIAMAV
AQQTPIMLLDEPTTFLDLAHQIDVLDLIFELNRTDGRTIVMVLHDLNQASRYADHMIVMKAGLVMAAGQPSEVISAELVE
ETFGVPCEITVDPVSDTPLVIPAGRHHRASQPIADLTRRRAPAAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 8e-56 50
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-61 50
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-61 50
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-61 50
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-61 50
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-67 49
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-52 46
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 8e-60 44
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 8e-60 44
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-52 42
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-52 42
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-52 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 8e-52 42
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 2e-37 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Snas_5334 YP_003514061.1 ABC transporter-like protein BAC0164 Protein 5e-56 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Snas_5334 YP_003514061.1 ABC transporter-like protein VFG0925 Protein 1e-67 51
Snas_5334 YP_003514061.1 ABC transporter-like protein VFG1042 Protein 4e-56 50