Gene Information

Name : Snas_4513 (Snas_4513)
Accession : YP_003513251.1
Strain : Stackebrandtia nassauensis DSM 44728
Genome accession: NC_013947
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 4813969 - 4814745 bp
Length : 777 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_06574 ABC-type cobalamin/Fe3+- siderophores transport system, ATPase components

DNA sequence : 
GTGAAGCTGTCCGTCAAGGACCTGTGCGCGTCCTACCCGGGTGTCAAGGCGGTGTCCGGAGTGGACCTGGAGGTGGAGCC
GGGGACGGTGGTGGCGATCGTGGGCCCCAACGGTTGCGGGAAGTCCACACTGCTGCGCAGTGTCGCCCGGCTGCACAAAC
CCGACTCGGGTTCGGTGACCGTCGACGGCGACGAGGTGTGGAGCCTGCGGCCCCGCGCCGCCGCCACCCGGCTGGCGCTG
CTGCCGCAGTCCCCGATCGCGCCGGAGGCCATCACCGTGGCGGGTCTGGTCGCCTATGGACGGCACCCGCACCAGGGCCT
GTTCCGGCAGTGGTCGCGCGCCGACGCCGAGGCCGCCGACCGGGCGCTGGCCGCCACCGGCGTGGCCGAGCTGGCGAACC
GTCGACTGGAGACACTGTCGGGCGGACAGCGGCAGCGCTGCTGGCTGGCGATGACGCTGGCGCAGGAGACGCCGATCCTG
CTGCTGGACGAACCCACCAGTGCCCTGGACCTGGGGCACGCGGTGGAGACGCTGCACGTGATCCGGCAGGTCGCGGCGCG
GGGCCGCAGCGTCGTCATGGTGCTGCACGACCTGGGAGCGGCGGCGCGCTACGCCGACGTGCTGGTGGCCATAAAGGACG
GTGAGGTGGTGGCGAACGGCGACCCGCGCGTCGTGGTCACCTCCGAGTTGGTGCGGCGGTTGTACGACGTCGAGGCCGAC
ATCCTCACCGCTCCGGGGGATGGCGCCCCGGTGGTGGTGCCCCGGGCGGAGGCGTGA

Protein sequence : 
MKLSVKDLCASYPGVKAVSGVDLEVEPGTVVAIVGPNGCGKSTLLRSVARLHKPDSGSVTVDGDEVWSLRPRAAATRLAL
LPQSPIAPEAITVAGLVAYGRHPHQGLFRQWSRADAEAADRALAATGVAELANRRLETLSGGQRQRCWLAMTLAQETPIL
LLDEPTSALDLGHAVETLHVIRQVAARGRSVVMVLHDLGAAARYADVLVAIKDGEVVANGDPRVVVTSELVRRLYDVEAD
ILTAPGDGAPVVVPRAEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-40 49
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-40 49
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-40 49
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-40 49
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 4e-43 45
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-46 44
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-40 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Snas_4513 YP_003513251.1 ABC transporter-like protein BAC0164 Protein 3e-43 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Snas_4513 YP_003513251.1 ABC transporter-like protein VFG1042 Protein 2e-43 45
Snas_4513 YP_003513251.1 ABC transporter-like protein VFG0925 Protein 5e-46 45