Gene Information

Name : Mrub_2972 (Mrub_2972)
Accession : YP_003508736.1
Strain : Meiothermus ruber DSM 1279
Genome accession: NC_013946
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3007379 - 3008092 bp
Length : 714 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; InterPro IPR003439:IPR003593:IPR017871; KEGG: saz:Sama_1468 putative macrolide efflux ABC transporter, ATP-binding protein; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; S

DNA sequence : 
GTGACGGTGGTCTCCCTGCAGCAGGTGCGCAAGGTGTACAAAAGCGGGGCGCTCGAGTTTGAGGCCCTCAAGGGGGTTTC
GCTGGAGATTCGCCAGGGCGAGATGGTGGCCCTGATGGGGCCTTCGGGCTCGGGCAAAACCACCCTGATGCAGATCATCG
GCCTGCTCGACCGCCCCACCGAGGGGCGCTATATCCTGGCCGGGCGGGACGTCACCACCCTGACCGAAAACGAGCGGGCC
GAAGTGCGCAACCAGGAGATCGGCTTTGTTTTTCAGGCTTTTCACCTGTTGCCGCGTCTGAGCGTGCTGGAGAATGTGGA
GGTGCCCCTCACCTACGCCGGTTATGGCCCCCAGGAGCGGCGGGAGCGGGCCCTCGAGGTGCTGCAAAAGGTGGGACTGG
GCAACAAGCTCAAGAACCTGCCCTCCCAGCTTTCGGGCGGCCAGAAGCAGCGGGTGGCCATCGCCCGGGCCCTGACCATG
CGCCCCTCCATCCTGCTGGCCGACGAGCCGACCGGCAACCTCGACTCCAAGACCGCCGTAGAGGTCATGCGGCTGTTTCA
GGAGCTCAACGATGAGGGCACCAGCGTGATTATCGTGACCCACGAGCCCGATATCGCCGAGTACACCGGGCGCATCGTGC
GCATCCGGGACGGACAGATCGAGTCCGACGGCCCCAACCCCCACCGCAAACGGGCTGTAGGAGGTGTGGCATGA

Protein sequence : 
MTVVSLQQVRKVYKSGALEFEALKGVSLEIRQGEMVALMGPSGSGKTTLMQIIGLLDRPTEGRYILAGRDVTTLTENERA
EVRNQEIGFVFQAFHLLPRLSVLENVEVPLTYAGYGPQERRERALEVLQKVGLGNKLKNLPSQLSGGQKQRVAIARALTM
RPSILLADEPTGNLDSKTAVEVMRLFQELNDEGTSVIIVTHEPDIAEYTGRIVRIRDGQIESDGPNPHRKRAVGGVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-34 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-34 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mrub_2972 YP_003508736.1 ABC transporter NC_012469.1.7686878. Protein 4e-60 56
Mrub_2972 YP_003508736.1 ABC transporter NC_008702.1.4606598. Protein 9e-48 52
Mrub_2972 YP_003508736.1 ABC transporter CP001581.1.gene798.p Protein 9e-37 43
Mrub_2972 YP_003508736.1 ABC transporter CP001581.1.gene598.p Protein 6e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mrub_2972 YP_003508736.1 ABC transporter VFG0869 Protein 1e-25 42