Gene Information

Name : Dacet_0668 (Dacet_0668)
Accession : YP_003503412.1
Strain : Denitrovibrio acetiphilus DSM 12809
Genome accession: NC_013943
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 675607 - 676434 bp
Length : 828 bp
Strand : -
Note : PFAM: Integrase catalytic region; KEGG: glo:Glov_3714 integrase catalytic region

DNA sequence :
ATCTGTAAAACCCTCAAAGTATCTCGGAGTAGTTATTACTCTTGGATTAACCGTAAAGCCTCTAAACGCTCTCAGGACGA
TGAGAAGCTTAAAGTATTTATCAGGATGGCTCACAAGAAGGGCAGAGGTACATATGGCGTAGAGAAGCTTCAGTACGAGC
TGAGAGGTGAGCATGGCATAGAAGTAAGCCTTCATCGCATCAAGCGTCTGCGCAAAGAGATGGGGCTTCGGTGTAAGCAG
GTGAAGAAATTCAAGGCGACAACGAATTCAAAGCACAATCATCCTGTTGCACCGAATTTGTTGAACCAGAATTTCTCCGT
ATCCGGTCCTTGTCAGGTATGGGTATCTGACATTACCTATTGCGCCACAGACGAAGGCTGGCTGTATCTGGCAGGGATAA
AGGATTTATGGAATAAAGAGATTGTGGGCTATGCTATGAGCTCCAGAATGACCCAAGACCTTGTTGGTCGTGCTCTGTTC
CGTGCGGTCACGCTGAAACGTCCGCCAGTTGGAATAATCCATCATTCCGACAGAGGGGCACAATACTGCTCGAAGAACTA
CAGAGCCATTCTGGAGCAGTTTGGTTTCGAGGTCTCAATGAGTCGTAAGGGTAACTGTTACGATAATGCGCCGATGGAAA
GCTTCTTTGGTACGTTGAAGAATGAACTGGTTCATCATCAGAAATATTCTACACGTCAGGAAGCAGAGGCTGACATTCAG
GAATATATTGAGATATTTTACAATCGGGTGAGAAGACATGCCAGCCTTGGTAATCTTTCACCTGCTGCATATGCTCGATT
AGAATTGACGAAGCGTTACGCTAAATGA

Protein sequence :
MCKTLKVSRSSYYSWINRKASKRSQDDEKLKVFIRMAHKKGRGTYGVEKLQYELRGEHGIEVSLHRIKRLRKEMGLRCKQ
VKKFKATTNSKHNHPVAPNLLNQNFSVSGPCQVWVSDITYCATDEGWLYLAGIKDLWNKEIVGYAMSSRMTQDLVGRALF
RAVTLKRPPVGIIHHSDRGAQYCSKNYRAILEQFGFEVSMSRKGNCYDNAPMESFFGTLKNELVHHQKYSTRQEAEADIQ
EYIEIFYNRVRRHASLGNLSPAAYARLELTKRYAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAF09030.1 unknown Not tested SHI-O Protein 3e-79 63
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 4e-79 63
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 3e-79 63
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 4e-79 63
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 4e-79 63
unnamed AAF09022.1 unknown Not tested SHI-O Protein 4e-79 63
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 3e-79 63
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 3e-79 63
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 8e-77 62
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 6e-48 43
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 6e-48 43
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 6e-48 43
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 4e-46 42
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 6e-46 42
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 9e-46 42
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 6e-46 42
tnpB CAB61574.1 transposase B Not tested HPI Protein 3e-34 41
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 2e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dacet_0668 YP_003503412.1 integrase catalytic subunit VFG1706 Protein 2e-79 63
Dacet_0668 YP_003503412.1 integrase catalytic subunit VFG1631 Protein 2e-46 42