|
Name : Dacet_2560 (Dacet_2560) Accession : YP_003505275.1 Strain : Denitrovibrio acetiphilus DSM 12809 Genome accession: NC_013943 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 2717489 - 2720575 bp Length : 3087 bp Strand : + Note : TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; KEGG: sat:SYN_00497 type I restriction-modification system restriction subunit; SMART: DEAD-like helicase DNA sequence : ATGACTAAACTCATCGAAGACACACTCGAATACGTTTTAATAGACCTTTTTAAAGAGCTGGGGTATGACTACGCCTTTGC TCCTGACTTTACCATGGTGGATGATGACGGCGGCGATTATGAACGCATCAGCACGGACGAGGTTATTCTCACCAAGCGGT TGAAACGCAAGCTGATGGAGATTAACCCAGAGGTAGGCGAAGAGCAGATTGATGAAGCAATCAAAAAGCTTAGTAACCCG GAGAGCGTGAAGCTCATCGACAATAACCGAGCGTTTCATAAATACGTCACAGACGGAATCAGCATTCCATACCACGAAGA CGGCGAGACAAAGACAGCAATAATCAATCTTTTCGACTTTAAAGACATTAGTAACAATGACTGGCTGGTGGCGAACCAGT TCACCGTTACCGAGGCAAAAGAGAAGCGCAGACCAGACGTTATAGTCTTCGTAAACGGTTTACCGCTGGCAGTAATCGAG CTGAAAAATCCATCTGATGAAAAGGCAACTATGTTCGATGCCTTCACTCAGCTTCAAAACTATAAAAATTTCATCCCGAA CCTGTTTAACTATAACGAAATCCTTATTGCCTCCGACGGCTACAGTGCAACGGCAGGCTCACTTACTGCCGACTGGGAAC GCTTCATGCCGTGGAAGACCGTGAACGGCGAAAAAGACCCAAAAGGCATGATTCAGCTGGAAGTGCTCATCAGAGGCATG TTTGACAAAGAGCGTTTTCTGGACATCATCCGAAACTTCATCGTTTTCGAAGTGAGTGACGACAAAATCATCAAAAAGAT GGCTGGCTACCATCAGTACCACGCAGTGAACAAAGCACTCAGCAGAACAGTTGAAGCTACCTCCGAAAAAGGGGACAAAC GAATAGGCGTTGTGTGGCACACTCAAGGAAGCGGAAAGAGCCTCTCTATGGTATTTTATTCTGGTAAAGTTGTGCAAAAG CTGGAGCTAAGCAACCCGACATTGGTTGTACTTACAGACAGGAACGACCTTGACGAACAGCTATTCGGCAATTTCTCACT ATGCAGTGACCTGCTCCGTCAGAAACCTGTGCAGGCAACAAGCAGAGCACACCTGCGGGAACTGCTAAATGTGGCATCCG GCGGAATAGTGTTTACCACGATACAGAAGTTTTTCCCGAAAGAAGACGAAGACAGCCACCCAGAGCTGAGCCCACGCAGA AACATCATCGTTATGGCAGACGAGGCACACAGAAGCCAGTATGACTTCATAGACGGCTTTGCTCGGCACATGCGGGATGC TCTCCCCGGTGCGGCGTTCATCGGCTTTACCGGAACGCCAATCGAAACATCAGACAAAGTTACTACTTCCGTATTCGGCT CATATATTGACATATACGACATGGAAGATGCTGTAAATGACGGGGCAACCGTCCGCATCTATTACGAAGCACGTCTTGCG AAAATCGACTTTGACGAGGTTGAAAAACCGAAAGTAGACCCAGAGTTTGAGCAAGTAACAGAAGACCAAGAAAAGTTCGA AAAACAGAAGCTACAGGCAAAATGGACAGCATTAGAAGCTCTTGTAGGGGCGACCAGCAGGCTGGAGCTTGTAGCGAAAG ACATAGTAGAGCATTTCGAAGACCGACTCTCTGCTATGGACGGAAAAGCTATGGTTGTGTGTATGAGCCGCCGCATATGT GTTGAGCTTTACAATGAAATAGCAAAGCTACGCCCAGACTGGCATGACGAAGACGACAAGCAAGGCTTCATAAAAATCAT AATGTCCGGCTCAGCATCTGACAAGGAAGAATGGCAACCGCACATACGCACCAAACAGCAGAGAGAAGAGCTGGCAAACA GGTTCAAAAAGCCCGACACAGACTTCAAGCTGGTAATAGTTCGTGACATGTGGCTGACAGGGTTTGACGCACCATGTATG CATACGATGTATGTAGACAAACCTATGGGCGGGCATAACCTTATGCAGGCAATCGCTCGTGTTAACAGGGTTTTCAAAGA CAAGCCCGGTGGACTGGTGGTGGACTACATCGGCATTGCAGACGACCTGAAAAACGCTATGCGTAATTACACCGCTAGTG GCGGTAAAGGAAAGTCTCACCACGACAAAGACGAAGCCGCCGCATATATGATGGAGAAGTTCGAGCAGGTCATCGACCTT ATGCACGACTTTGACTATGAGGCAATCCTTCACTCCAAAGAAAAAGAACGATTGGACGGCATTTATGAAGCTATGGAATA TGTTCTCTCCATAGACCGCAAAATGGACTTTATAAAGATGGTGACAGAGCTTTCACGTGCTTTTGCACTGGCTGTCCCTG CACCCCAGACGGTGGAAGTCAGAGACTATTTAGCCCTGTTTCAAGAAATTAAAGCGGCAATCATAAAGAACACCATTACC CCAGAGAAAAAGTCGCCAGATGAGCTGAATACGGCTCTTAAACAGCTTGTTTCAAAAGCGGTTACGGCGAATGGCGTTGT AGATGTTTTTGGTGCAGCAGGCTTGGACAAACCAGAAATCTCCATTCTCTCAGATGAATTTTTGGCAGAGGTGAAAGAAT ACCCATACAAGAACCTTGCCGTTGAGATGCTGGCAAAGCTGTTGGCTGATGAAATAAAGATTAAGCTGAAACGGAATGTG GTGAAATCCCGCTCATTTATAGAAAGACTCGAAGAATCGATGAAGAATTACCAGAACCGCTCTATTGAGGCGGCAATGGT TATTCAGCATCTTATAGACCTTGCAAAAGAGATGCGAAAAGAAGCAGAGCGAGGCAACGACCTTGGGCTGAGTGATGATG AAATCGCTTTTTACGATGCACTTCTGACAGAAAATGCCGCTTTTGGCGAGAGGCTCTTAAAAGAGATGGGGGACGAGCTG AAAGTTGTCGCTGTTGAGCTTGTGCAAGCAGTTAAGAAGAACGTAACCATAGACTGGACTAAAAGAGACGCTGTGAAAGC CAAGCTGAGAGTAATCGTTAAACGTATACTCCGCAAATACGGCTACCCGCCAGAAGCAAGCGACAAAGCCACCCAGACAG TTCTGGAACAAGCAGCCGCCCTTTGTGAAGAATGGGCAGAGTGTTAG Protein sequence : MTKLIEDTLEYVLIDLFKELGYDYAFAPDFTMVDDDGGDYERISTDEVILTKRLKRKLMEINPEVGEEQIDEAIKKLSNP ESVKLIDNNRAFHKYVTDGISIPYHEDGETKTAIINLFDFKDISNNDWLVANQFTVTEAKEKRRPDVIVFVNGLPLAVIE LKNPSDEKATMFDAFTQLQNYKNFIPNLFNYNEILIASDGYSATAGSLTADWERFMPWKTVNGEKDPKGMIQLEVLIRGM FDKERFLDIIRNFIVFEVSDDKIIKKMAGYHQYHAVNKALSRTVEATSEKGDKRIGVVWHTQGSGKSLSMVFYSGKVVQK LELSNPTLVVLTDRNDLDEQLFGNFSLCSDLLRQKPVQATSRAHLRELLNVASGGIVFTTIQKFFPKEDEDSHPELSPRR NIIVMADEAHRSQYDFIDGFARHMRDALPGAAFIGFTGTPIETSDKVTTSVFGSYIDIYDMEDAVNDGATVRIYYEARLA KIDFDEVEKPKVDPEFEQVTEDQEKFEKQKLQAKWTALEALVGATSRLELVAKDIVEHFEDRLSAMDGKAMVVCMSRRIC VELYNEIAKLRPDWHDEDDKQGFIKIIMSGSASDKEEWQPHIRTKQQREELANRFKKPDTDFKLVIVRDMWLTGFDAPCM HTMYVDKPMGGHNLMQAIARVNRVFKDKPGGLVVDYIGIADDLKNAMRNYTASGGKGKSHHDKDEAAAYMMEKFEQVIDL MHDFDYEAILHSKEKERLDGIYEAMEYVLSIDRKMDFIKMVTELSRAFALAVPAPQTVEVRDYLALFQEIKAAIIKNTIT PEKKSPDELNTALKQLVSKAVTANGVVDVFGAAGLDKPEISILSDEFLAEVKEYPYKNLAVEMLAKLLADEIKIKLKRNV VKSRSFIERLEESMKNYQNRSIEAAMVIQHLIDLAKEMRKEAERGNDLGLSDDEIAFYDALLTENAAFGERLLKEMGDEL KVVAVELVQAVKKNVTIDWTKRDAVKAKLRVIVKRILRKYGYPPEASDKATQTVLEQAAALCEEWAEC |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 48 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 48 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 47 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 47 |
