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Name : fimD (G2583_4286) Accession : YP_003501739.1 Strain : Escherichia coli CB9615 Genome accession: NC_013941 Putative virulence/resistance : Virulence Product : PapC-like porin protein involved in fimbrial biogenesis Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 4342742 - 4345315 bp Length : 2574 bp Strand : - Note : - DNA sequence : ATGTCACGGAAGACCGTTTCACGTACTTTTTCTTCCTTTTCTATCTCTGTGGTGGCGGTTGCTGTTGCCAGCACGTTTTC TGCACATGCCGGAAAGTTTAACCCCAAATTCCTGGAGGACGTTCAGGGTGTGGGCCAGCATGTCGATTTAACGATGTTCG AAAAAGGCCAGGAACAGCAGTTACCCGGCATCTATCGTGTCTCTGTTTACGTCAATGAACAGAGAATGGAAACCCGCACA CTGGAATTTAAAGAGGCCACAGAAGCACAGCGCAAAGCGATGGGGGAATCCCTTGTGCCTTGCCTTAGCCGGACGCAACT GGCAGAGATGGGCGTGCGCGTTGAAAGCTTTCCGGCCCTCAATCTGGTGTCTGCCGAAGCCTGCGTACCGTTTGACGAAA TCATTCCCCTGGCCTCAAGCCATTTCGACTTCAGTGAACAAAAGCTGGTATTAAGTTTCCCTCAGGCGGCGATGCACCAG GTGGCGCGCGGCACGGTGCCGGAATCTTTATGGGACGAAGGTATCCCTGCGTTGCTGCTGGATTACAGTTTTAGCGGGAG CAACAGTGAATATGACTCGACGGGGTCTTCCAGCAGTTATGTCGATGATAATGGCACTGTTCATCATGATGATGGTAAAG ATACGCTAAAGAGCGACAGCTACTACCTCAACTTACGCAGCGGGCTGAACCTTGGCGCTTGGCGGTTACGGAATTACAGT ACCTGGAGCCATTCCGGTGGCAAAGCGCAGTGGGATAATATCGGTACGTCTTTGAGTAGGGCCATCATCCCTTTCAAAGC GCAATTAACAATGGGGGATACGGCGACCGCGGGGGACATTTTTGACAGCGTTCAGATGCGTGGCGCGATGTTAGCCTCTG ATGAAGAGATGCTGCCCGACAGCCAGCGAGGCTTTGCACCCATCGTTCGAGGGATCGCCAAAAGCAACGCCGAAGTCAGT ATTGAACAAAACGGCTACGTTATTTATCGCACCTATGTGCAGCCTGGTGCCTTTGAAATAAACGATCTTTACCCCACTGC AAACAGCGGTGATCTCACGGTCATTATTAAAGAAGCGGATGGCAGTGAACAACGCTTTATTCAGCCATTCTCATCGGTGC CAATTTTCCAGCGTGAAGGCCATCTCAAATATAGCTTTGCCGCAGGTGAATATCAGGCCGGGAATTATGACAGCGCCTCG CCGCGTTTCGGGCAGCTTGATCTGATCTACGGTTTACCGTGGGGGATGACGGCCTACGGCGGCGTATTAATCTCTAATAA TTACAATGCATTTGCATTAGGGATAGGGAAAAACTTTGGTTATATCGGGGCGATTTCCATTGATGTGACGCAGGCTAAAA GCGAACTGAATAACGATCGCGATAGCCAGGGACAATCTTATCGTTTCTTATATTCCAAGAGCTTCGAAAGCGGCACCGAT TTCCGCCTTGCGGGCTATCGGTACTCTACCAGCGGTTTCTATACCTTCCAGGAAGCCACCGATGTGCGCAGTGACGCTGA CAGCGACTATAACCGTTATCACAAGCGCAGCGAAATACAGGGTAACCTGACGCAGCAATTAGGGGCCTATGGCTCTGTTT ATTTAAATTTAACGCAGCAGGATTACTGGAACGACGCAGGTAAACAGAACACGGTATCGGCGGGTTACAACGGACGTATT GGCAAGGTCAGTTACAGTATTGCATATAGCTGGAATAAAAGCCCTGAATGGGATGAAAGCGATCGCTTGTGGTCTTTCAA TATTTCCGTTCCACTAGGCCGGGCCTGGAGTAACTATCGCGTCACGACCGACCAGGATGGTCGTACCAATCAACAGGTTG GGGTCAGCGGAACGCTGCTTGAGGATCGCAACCTGAGCTACAGTGTCCAGGAAGGCTACGCCAGCAACGGTGTGGGTAAC AGCGGTAACGCTAACGTTGGCTATCAGGGTGGGTCCGGTAATGTCAACGTAGGCTATAGCTACGGGAAAGATTACCGGCA GCTCAACTACAGCGTTCGCGGCGGCGTGATAGTTCATAGCGAAGGCGTGACGCTTTCCCAACCGCTAGGCGAAACCATGA CGCTCATCTCCGTACCCGGTGCGCGCAATGCCCGCGTGGTGAATAACGGCGGCGTTCAGGTTGACTGGATGGGTAACGCG ATCGTGCCTTATGCCATGCCGTATCGTGAAAACGAAATCTCACTGCGTAGCGATTCGTTGGGTGACGATGTTGACGTTGA AAATGCGTTCCAGAAAGTGGTGCCAACGCGTGGAGCGATTGTCAGAGCGCGTTTTGATACCCGCGTTGGTTACCGCGTAT TAATGACGCTGCTTCGTTCCGCGGGCAGCCCGGTGCCCTTTGGAGCAACGGCAACGCTAATCACCGATAAACAAAACGAG GTGAGCAGTATCGTTGGTGAAGAAGGACAGCTCTATATTAGCGGAATGCCAGAGGAAGGACGGGTATTGATTAAATGGGG TAATGACGCGTCGCAGCAATGCGTGGCGCCTTATAAATTATCCCTGGAATTAAAACAGGGCGGAATTATTCCTGTTTCGG CCAATTGCCAGTAA Protein sequence : MSRKTVSRTFSSFSISVVAVAVASTFSAHAGKFNPKFLEDVQGVGQHVDLTMFEKGQEQQLPGIYRVSVYVNEQRMETRT LEFKEATEAQRKAMGESLVPCLSRTQLAEMGVRVESFPALNLVSAEACVPFDEIIPLASSHFDFSEQKLVLSFPQAAMHQ VARGTVPESLWDEGIPALLLDYSFSGSNSEYDSTGSSSSYVDDNGTVHHDDGKDTLKSDSYYLNLRSGLNLGAWRLRNYS TWSHSGGKAQWDNIGTSLSRAIIPFKAQLTMGDTATAGDIFDSVQMRGAMLASDEEMLPDSQRGFAPIVRGIAKSNAEVS IEQNGYVIYRTYVQPGAFEINDLYPTANSGDLTVIIKEADGSEQRFIQPFSSVPIFQREGHLKYSFAAGEYQAGNYDSAS PRFGQLDLIYGLPWGMTAYGGVLISNNYNAFALGIGKNFGYIGAISIDVTQAKSELNNDRDSQGQSYRFLYSKSFESGTD FRLAGYRYSTSGFYTFQEATDVRSDADSDYNRYHKRSEIQGNLTQQLGAYGSVYLNLTQQDYWNDAGKQNTVSAGYNGRI GKVSYSIAYSWNKSPEWDESDRLWSFNISVPLGRAWSNYRVTTDQDGRTNQQVGVSGTLLEDRNLSYSVQEGYASNGVGN SGNANVGYQGGSGNVNVGYSYGKDYRQLNYSVRGGVIVHSEGVTLSQPLGETMTLISVPGARNARVVNNGGVQVDWMGNA IVPYAMPYRENEISLRSDSLGDDVDVENAFQKVVPTRGAIVRARFDTRVGYRVLMTLLRSAGSPVPFGATATLITDKQNE VSSIVGEEGQLYISGMPEEGRVLIKWGNDASQQCVAPYKLSLELKQGGIIPVSANCQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 3e-158 | 43 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 6e-163 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fimD | YP_003501739.1 | PapC-like porin protein involved in fimbrial biogenesis | VFG0454 | Protein | 0.0 | 70 |
| fimD | YP_003501739.1 | PapC-like porin protein involved in fimbrial biogenesis | VFG0876 | Protein | 1e-168 | 46 |
| fimD | YP_003501739.1 | PapC-like porin protein involved in fimbrial biogenesis | VFG0446 | Protein | 9e-154 | 43 |
| fimD | YP_003501739.1 | PapC-like porin protein involved in fimbrial biogenesis | VFG1645 | Protein | 4e-163 | 43 |
| fimD | YP_003501739.1 | PapC-like porin protein involved in fimbrial biogenesis | VFG0912 | Protein | 1e-162 | 43 |
