Gene Information

Name : gspC (G2583_3687)
Accession : YP_003501162.1
Strain : Escherichia coli CB9615
Genome accession: NC_013941
Putative virulence/resistance : Virulence
Product : general secretion pathway protein C
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG3031
EC number : -
Position : 3734878 - 3735837 bp
Length : 960 bp
Strand : -
Note : -

DNA sequence : 
TTGGCGCGGGTTGTTTTTCGTGACGCACGAATTTATCTCATTCAATGGCTGACAAAAATTCGTCACACTCTTAACCAGAG
ACAATCTCTTAATACAGACAAAGAGCATCTGCGCAAAATTGCACGCGGGATGTTCTGGCTGATGCTGCTTATTATTTCTG
CAAAAATGGCGTATTCACTCTGGCGCTATTTCTCCTTTTCTGCGGAATATACGGCGGTTTCTCAATCGGTGAATAAACCG
ACCCGTGCGGATGCAAAAGCGTTCGATAAAAAAGATGCGCAATTAATCAGCCAGCAAAACTGGTTTGGCAAATATCAGCC
CGTCGCCGCACCGGTAAAACAACCCGAACCTGCGCCTGTGGCAGAAACGCGTCTTAATGTGGTGCTGCGCGGGATCGCCT
TTGGTGCCAGACCCGGCGCGGTCATTGAAGAAGGCGGTAAACAGCAGGTCTATTTGCAGGGTGAAACGCTTGGCTCGCAC
AACGCAGTGATTGAGGAAATCAACCGCGACCATGTGATGCTGCGCTATCAGGGAAAAATAGAGCGCCTGAGCCTGGCTGA
AGAAGAGCGTTCCACCGTAGCCGTGACCAACAAAAAAGCCATCAGTGACGAAGTAAAGCAAGCTGTTGCTGAGCCTGCTG
TCAGTGCGCCAGTTGAGATCCCGACTGCCGTGCGTCAGGCACTGGCGAAAGATCCGCAGAAAATTTTTAACTATATCCAG
CTTACGCCTGTGCGTAAGGAGGGAATTGTCGGTTATGCAGTGAAGCCGGGGGCAGATCGTTCTCTGTTCGATGCCAGCGG
TTTTAAGGAAGGCGATATCGCCATTGCACTAAATCAGCAGGATTTCACTGATCCACGAGCAATGATTGCTCTGATGCGGC
AGTTACCTTCAATGGATTCCATTCAACTTACGGTTTTACGCAAGGGTGCGCGCCACGACATTTCCATCGCGCTGCGCTAA

Protein sequence : 
MARVVFRDARIYLIQWLTKIRHTLNQRQSLNTDKEHLRKIARGMFWLMLLIISAKMAYSLWRYFSFSAEYTAVSQSVNKP
TRADAKAFDKKDAQLISQQNWFGKYQPVAAPVKQPEPAPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGETLGSH
NAVIEEINRDHVMLRYQGKIERLSLAEEERSTVAVTNKKAISDEVKQAVAEPAVSAPVEIPTAVRQALAKDPQKIFNYIQ
LTPVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIALR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspC CAE85235.1 GspC, hypothetical type II secretion protein Not tested PAI V 536 Protein 1e-110 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
gspC YP_003501162.1 general secretion pathway protein C VFG2046 Protein 1e-109 94