Gene Information

Name : DEFDS_1877 (DEFDS_1877)
Accession : YP_003497087.1
Strain : Deferribacter desulfuricans SSM1
Genome accession: NC_013939
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1902397 - 1903053 bp
Length : 657 bp
Strand : -
Note : TC 3.A.1. The ATP-binding Cassette (ABC) Superfamily

DNA sequence : 
ATGATAGCTCTTAAAAATCTATGTAAAAGTTATGGTGAAACAAAAGTTTTAAAAGATATAAATTTACATATCAAAGATGG
AGAATTTGTATCAATCATGGGCCCATCAGGCTCAGGTAAATCCACACTTTTGAATATAATTGGTGCAATGGATAAACCTA
ATACTGGAGAAGTTATAATTAATGGTGTAAATATTACAAATTTCAATGAAGAAGAATTAACTGAATTTAGAAAAAAGTAT
ATAGGTTTTATTTTTCAGTTTTTTAATCTGTTCAACAATCTTACAGTTTATGAAAATGTATTAATCCCACTTTTGATAAA
TGGCATTAATAATGAAGATGAGATAGAAGAAGTATTAAATATCCTTGATATTAAACATAAAATAAACAATTTTGCACATC
AACTATCAGGTGGTGAGCAGCAAAGGGTTGCAATAGCACGCACAATAATAAAAAAGCCTAAGATTATTTTGGCTGATGAG
CCAACAGGAAGTCTTGATACACTCACTGGTGAAAAAATCTTAAATATTTTAAAGAGTTTAAATGCAAAATATAATACTAC
GATTGTTATGGTTACTCACAATGAAGAGATTGCAAAATTTACCGATAGAATAATCCGTATTAAAGATGGCCGTATTAGAG
ATTGGATAAGTGATTAA

Protein sequence : 
MIALKNLCKSYGETKVLKDINLHIKDGEFVSIMGPSGSGKSTLLNIIGAMDKPNTGEVIINGVNITNFNEEELTEFRKKY
IGFIFQFFNLFNNLTVYENVLIPLLINGINNEDEIEEVLNILDIKHKINNFAHQLSGGEQQRVAIARTIIKKPKIILADE
PTGSLDTLTGEKILNILKSLNAKYNTTIVMVTHNEEIAKFTDRIIRIKDGRIRDWISD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-26 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-26 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-26 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 8e-26 42
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 3e-23 41
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 5e-27 41
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 3e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DEFDS_1877 YP_003497087.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 5e-39 48
DEFDS_1877 YP_003497087.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 5e-38 47
DEFDS_1877 YP_003497087.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 2e-35 46
DEFDS_1877 YP_003497087.1 ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 7e-33 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DEFDS_1877 YP_003497087.1 ABC transporter ATP-binding protein VFG0869 Protein 3e-21 42