Gene Information

Name : fliP (DEFDS_1714)
Accession : YP_003496926.1
Strain : Deferribacter desulfuricans SSM1
Genome accession: NC_013939
Putative virulence/resistance : Virulence
Product : flagellar transport protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1746100 - 1746840 bp
Length : 741 bp
Strand : -
Note : -

DNA sequence : 
ATAGTTTATATCTGTTTTATTTTTTTACTTTTTGGTCAAAATTTAGTTTTAGCTGCTGACAATATCCCTTTACCCGCTGT
TAGATTTGGAATAGATACTGCAAAAAATCAAAATGATGTTGCTATAACTTTACAAATAATATTTTTAATAACCATACTTA
CACTGGCACCTGCCATATTACTGATGGTTACGTCTTTTACGCGGTTAATAATAGTTTTTTCCTTTTTAAGAAGTGCTTTG
GGTACTCAGCAATCTCCACCAAATCAGGTTTTGATAGGGCTTGCATTATTTTTAACATTTTTTATTATGTCGCCAGTATT
AAATGACATGTATAAAAATGCAGTTCAGCCTTATATGGATGGTAAGTTAAATTTTACTCAAGCGTTAGTTGAGGCTAAAA
AGCCATTGAGAAAGTTTTTATTAAAAAATACAAGGAAAAAAGAGCTTTTAACGTTTATAGAAATATCAAAAGTTCAAAGG
CCAAAAACTCCAGATGATATCCCTGACTCTGTATTGATTCCTGCATTTATTACAAGTGAGTTGCAGACAGCCTTTGAAAT
AGGATTTTTACTATTTCTGCCATTTTTGGTGATAGATTTTGTTGTTGCAAGTGTTTTACTTTCTATGGGTATGATGATGT
TGCCCCCAGTTATGATATCTTTACCTTTTAAAATTTTACTATTTGTGTTAGTTGATGGTTGGGGATTAATTGTTGGTTCG
ATGGTAAAAAGTTTTTATTAG

Protein sequence : 
MVYICFIFLLFGQNLVLAADNIPLPAVRFGIDTAKNQNDVAITLQIIFLITILTLAPAILLMVTSFTRLIIVFSFLRSAL
GTQQSPPNQVLIGLALFLTFFIMSPVLNDMYKNAVQPYMDGKLNFTQALVEAKKPLRKFLLKNTRKKELLTFIEISKVQR
PKTPDDIPDSVLIPAFITSELQTAFEIGFLLFLPFLVIDFVVASVLLSMGMMMLPPVMISLPFKILLFVLVDGWGLIVGS
MVKSFY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 7e-32 47
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 7e-32 47
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 5e-32 47
lscR AAO18040.1 LscR Virulence TTSS locus Protein 1e-32 46
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-31 46
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-31 46
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 4e-32 46
escR AAL57527.1 EscR Virulence LEE Protein 9e-29 45
escR CAC81847.1 EscR protein Virulence LEE II Protein 9e-29 45
escR CAI43889.1 EscR protein Virulence LEE Protein 9e-29 45
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-28 45
escR AAC31528.1 L0049 Virulence LEE Protein 9e-29 45
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-28 45
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 9e-29 45
escR AAC38369.1 EscR Virulence LEE Protein 5e-28 45
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-28 45
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-28 45
escR AAK26700.1 EscR Virulence LEE Protein 9e-29 45
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-28 45
unnamed AAL06354.1 EscR Virulence LEE Protein 5e-30 45
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 9e-33 44
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 9e-33 44
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-28 44
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-28 44
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-32 43
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-32 43
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 5e-32 43
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 5e-32 43
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 3e-31 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-31 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-27 41
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 1e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_003496926.1 flagellar transport protein FliP VFG2016 Protein 3e-54 62
fliP YP_003496926.1 flagellar transport protein FliP VFG2494 Protein 3e-51 58
fliP YP_003496926.1 flagellar transport protein FliP VFG1259 Protein 4e-51 56
fliP YP_003496926.1 flagellar transport protein FliP VFG2338 Protein 7e-50 55
fliP YP_003496926.1 flagellar transport protein FliP VFG0519 Protein 3e-32 47
fliP YP_003496926.1 flagellar transport protein FliP VFG0715 Protein 3e-28 45
fliP YP_003496926.1 flagellar transport protein FliP VFG0827 Protein 5e-29 45
fliP YP_003496926.1 flagellar transport protein FliP VFG0394 Protein 1e-32 44
fliP YP_003496926.1 flagellar transport protein FliP VFG0188 Protein 1e-33 44