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Name : DEFDS_1307 (DEFDS_1307) Accession : YP_003496530.1 Strain : Deferribacter desulfuricans SSM1 Genome accession: NC_013939 Putative virulence/resistance : Virulence Product : general secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1319845 - 1321302 bp Length : 1458 bp Strand : - Note : - DNA sequence : GTGAGCCAGATAAAAGATAATATTATAAAGTTTTATCTTAAATTTCCAGATAAAGGGGATTTTTTCCCAGAATTAAAGGA TGATAATTCTGTTACAATACTTTATTCTAACGAGTCAGGTTTTAAAAAAGGTTTGCTTTTGGCTGATAGAGTAGGTTTAC AGTATGATTTTAGACCTGTTGATAAAAAGGAGATATTATCTAAGCTTGAAGATATTAGCGAACATTTTGATAATGTAGAA GACTTTGGACATGATGAAGATAATAGTGAAATAGAGGATATACTTTCTGCAAGTTATCAGGATGCACCTATTATTAACCT TGTAAATCAATTGATTGTTGATGCAGTAAAAGCTGATGCAAGCGATATTCATTTTGAAAACGGTGAAAATACTTTTTTGG TAAAATATAGGATTGATGGTGTGTTGAGAACTATAAGAACTTTTAAAAAAGGGATTCATGACCAGGTAATTGCAAGAATA AAAGTTATGTCTATGCTTGATGTGGCTGAAACAAGAAAACCTCAGGATGGAAGAATTAATATAAAAGTTGGAAATCGCGG CGTGGATATGAGGGTTTCTATTATTCCCTCAATTAGGGGAGAAAAAGCAGTTTTAAGGATTTTGGAAAAAACAAAAGGGT TGATAACTCTCGAAAATATTGGGATGCCAGAGCACTATCTTAAAAAGTATAGAGAATATATAAATAGACCAAATGGTATC ATTTTGGTAACAGGACCTACAGGAAGTGGTAAAACTACTACTCTTTATGCTTCCCTACTGGAAATAGATAGAGAAGAGAA AAATATTGTGACAATTGAAGACCCTGTAGAATACGATATTGATGGTATTACTCAAGTGCAGGTAAATCCTGTTGTAAACC TTGATTTTGCATCAGCTATAAGATCGTTTTTAAGGCAAGATCCGGATGTGATTCTTGTTGGCGAAATTAGGGATGAAGAA ACAGCAAAAGCAGCTGTGCAGGCTTCTTTAACAGGTCATCTTGTTTTTTCTACTCTCCATACCAATGATGCACCAACAGC TGTTGCAAGATTAATAGATATGAATGTAGAGCCATTTTTGATATCTTCTTCATTGCAGATTGTGATAGCACAGAGATTAT TAAGGAAAGTTTGTGAACATTGCAAAATTGAAGTTGATTTAGATGATAATGTAAAAGAATTGTTTAAAGAGTACGGTATT ATTCTTGAAAGAGCTGTAATAGGAAAAGGGTGTGAACACTGCTTTGGAACTGGATATAAAGGTAGGACTGCTATTTTTGA ATTTTTAGAAATAAATGATGAAATTAGAAGGTTGATAAATGCGAAATCTGATTCTGAAGAGATTGCAAAAGTTGCAAAGA AATATGGATATAAGCGATTAATAGAAGAGGGTGCTAAACTTATTCAAAATCAGATTACCACTGTTGAAGAAGTTTTAGCA GTTACAAAATTTGAGTAG Protein sequence : MSQIKDNIIKFYLKFPDKGDFFPELKDDNSVTILYSNESGFKKGLLLADRVGLQYDFRPVDKKEILSKLEDISEHFDNVE DFGHDEDNSEIEDILSASYQDAPIINLVNQLIVDAVKADASDIHFENGENTFLVKYRIDGVLRTIRTFKKGIHDQVIARI KVMSMLDVAETRKPQDGRINIKVGNRGVDMRVSIIPSIRGEKAVLRILEKTKGLITLENIGMPEHYLKKYREYINRPNGI ILVTGPTGSGKTTTLYASLLEIDREEKNIVTIEDPVEYDIDGITQVQVNPVVNLDFASAIRSFLRQDPDVILVGEIRDEE TAKAAVQASLTGHLVFSTLHTNDAPTAVARLIDMNVEPFLISSSLQIVIAQRLLRKVCEHCKIEVDLDDNVKELFKEYGI ILERAVIGKGCEHCFGTGYKGRTAIFEFLEINDEIRRLINAKSDSEEIAKVAKKYGYKRLIEEGAKLIQNQITTVEEVLA VTKFE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-85 | 43 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-85 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| DEFDS_1307 | YP_003496530.1 | general secretion pathway protein E | VFG1876 | Protein | 3e-87 | 50 |
| DEFDS_1307 | YP_003496530.1 | general secretion pathway protein E | VFG0182 | Protein | 9e-90 | 49 |
| DEFDS_1307 | YP_003496530.1 | general secretion pathway protein E | VFG1880 | Protein | 9e-77 | 44 |
| DEFDS_1307 | YP_003496530.1 | general secretion pathway protein E | VFG0233 | Protein | 5e-73 | 44 |
| DEFDS_1307 | YP_003496530.1 | general secretion pathway protein E | VFG2048 | Protein | 2e-86 | 43 |
| DEFDS_1307 | YP_003496530.1 | general secretion pathway protein E | VFG2426 | Protein | 8e-70 | 42 |
