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Name : DEFDS_1256 (DEFDS_1256) Accession : YP_003496480.1 Strain : Deferribacter desulfuricans SSM1 Genome accession: NC_013939 Putative virulence/resistance : Virulence Product : type IV pilus assembly protein PilB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1264152 - 1265837 bp Length : 1686 bp Strand : + Note : - DNA sequence : ATGAAATTGAAAAACATCAGAATTGGTGATTTACTTGTTTCAAAAGGGTATCTAACAGAAGCTCAACTTAAAGTTGCCCT TGAAGAGCAGAAAAAAACAGGGAAAAAAATAGGCGAAGTCTTAATAGACCTGGGATATATTACAGAAGATTTTCTCCTCG ATATTTTATCAGAACAGCTTGGAATAGAACGTGTTACGTTAGATGAACTAGATTTAAACCCAAGCTTTAAAAATATAATA CCAGAAAATGTTGCAAGAAAATACAAAGTTATCCCTGTAAAAGTAGAAGGGAGCACTCTTTATATTGCAATGAGCGACCC AAACAATATCATTGCCATTGATGAAATAACAAGGCTCACAAAAAAAGATGTAATACCAATGCTTATTTCAAATGATGAAT TTTTGGCTGCATTTAATAAAATATACGGTGGTGAAGACCATCTTTACAACATTGCAAAAACGGTTGAAAAAGAGATCTCT GTGCTGTCAGCAGAAGATGACAGTGTTTATGAATCGTTAGCAGAAAGTTCATCAGCAATAGATCTTGTAAACAGTATTAT AGCCAAGGCAATAAATGAAAAAGCATCAGATATACATATAGAGCCAGATGAAGATATATTGAGAGTAAGATTCAGAATAG ATGGTATTTTACACGAAATTTTAACGTTAAACAAAATCTTAGCTCCAGCAATAATTTCAAGAATTAAGATTATGTCAAAT ATGAACATTGCAGAAAAAAGAGTTCCTCAAGATGGCAGATTTAAAATTAAGATAAACTTTCAAGAAATAGATTTTAGGGT ATCCACTTTACCAACAAACTTTGGTGAAAAAGCAGTATTAAGAGTACTCGATAGGAGCAAAGCATTGTTAGAACTTCACC ATATTGGTATGGATAATCATTCATTAGAAATCTATGATTCAATAATCTCAAAACCTTATGGAATCATATTGATTTCAGGG CCAACTGGTAGTGGTAAAACTACAACTTTGTATGCCACATTAAATAAACTTAATAGTTTAGAGAAGAATATTGTTACCAT AGAAGATCCTATTGAATATAATTTTAAAATTATTAATCAAGTTCAGGTGGATGAAACAGCTGGTGTCACATTCGCTTCAG CTTTGAGATCCATTTTAAGACAAGACCCAGATATTATTATGGTCGGGGAAATAAGGGATAAAGAAACTGCCCAAATTTCT ATTCAAGCCTCTCTAACAGGTCATTTGGTTCTTGCAACTATACACACGAACGATGCTGTAAGTAGTGTTGTAAGACTCGT AGATATGGGTATAGAACCATATTTAGTATCTTCCTCTTTAATAGGGGTAGTAGCTCAACGACTTGTTAGAAAAGTATGTT TAAACTGTGCTGTAGAATACACTCCTGATGAATCAATATTAAAACGGCTTGATATTAAATATCAAAATGCAAAGTTTGTT AGAGGCGAAGGCTGTCCTGATTGTCACTACACAGGTTACAAAGGGCGAATAGGTATTTATGAAGTTTTAAAAATCGATAC AGAAATGAGAGAAATGATAAGTAAAAATGCTACAACGGAAACCATTAGAAAGTATGCTTTAAGCAAAGGATTTCAAACTC TTTATGACTCTGGTATGAAACTAGCTTCTGTTGGAATAACTACTCTTGAAGAAGTCTTGAGAGTAACGACTATAGAAAAC GACTAA Protein sequence : MKLKNIRIGDLLVSKGYLTEAQLKVALEEQKKTGKKIGEVLIDLGYITEDFLLDILSEQLGIERVTLDELDLNPSFKNII PENVARKYKVIPVKVEGSTLYIAMSDPNNIIAIDEITRLTKKDVIPMLISNDEFLAAFNKIYGGEDHLYNIAKTVEKEIS VLSAEDDSVYESLAESSSAIDLVNSIIAKAINEKASDIHIEPDEDILRVRFRIDGILHEILTLNKILAPAIISRIKIMSN MNIAEKRVPQDGRFKIKINFQEIDFRVSTLPTNFGEKAVLRVLDRSKALLELHHIGMDNHSLEIYDSIISKPYGIILISG PTGSGKTTTLYATLNKLNSLEKNIVTIEDPIEYNFKIINQVQVDETAGVTFASALRSILRQDPDIIMVGEIRDKETAQIS IQASLTGHLVLATIHTNDAVSSVVRLVDMGIEPYLVSSSLIGVVAQRLVRKVCLNCAVEYTPDESILKRLDIKYQNAKFV RGEGCPDCHYTGYKGRIGIYEVLKIDTEMREMISKNATTETIRKYALSKGFQTLYDSGMKLASVGITTLEEVLRVTTIEN D |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-89 | 45 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-89 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| DEFDS_1256 | YP_003496480.1 | type IV pilus assembly protein PilB | VFG1876 | Protein | 8e-96 | 46 |
| DEFDS_1256 | YP_003496480.1 | type IV pilus assembly protein PilB | VFG0182 | Protein | 1e-97 | 46 |
| DEFDS_1256 | YP_003496480.1 | type IV pilus assembly protein PilB | VFG2048 | Protein | 1e-90 | 45 |
| DEFDS_1256 | YP_003496480.1 | type IV pilus assembly protein PilB | VFG0112 | Protein | 2e-85 | 41 |
