Gene Information

Name : SCAB_85501 (SCAB_85501)
Accession : YP_003494018.1
Strain : Streptomyces scabiei 87.22
Genome accession: NC_013929
Putative virulence/resistance : Virulence
Product : siderophore ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 9567942 - 9568856 bp
Length : 915 bp
Strand : +
Note : -

DNA sequence : 
GTGTCATCGACGTACGAACCGGACGCGGAGCGCGCCACCCGCGCGGACGCTCCCGCCGACGGCCGTGCCGCCGGCCCCGA
ATTGCGCGCCGAGGGCCTGCGCCTGGCCTACGACGACCGGATCGTCGTCGACGGCCTCGACCTGATCGTCCCCACCGGCC
GGGTCACCGCCATCGTCGGCGCCAACGCCTGCGGCAAGTCGACCCTGTTGCGCGCCCTCGCCCGGCTGCTCACGCCCAAG
GCCGGTGCCGTGCACCTCGACGGCCGTGCGGTGCACACCATCCCGGCCCGGACCCTCGCCCAGAAACTCGGCATCCTTCC
GCAGACGCCCGTCGCCCCCGAGGGGCTGACGGTCGTCGACCTGGTCGGACGGGGGCGTACACCGCACCAGACCTGGTGGC
GGCAGTGGTCGCGCAGCGACGAGGAGGCCGTGCACGAGGCGCTGCGGGCGACCGGGACGACCGATCTCGCGCACCGGCCC
GTCGACGAACTCTCCGGCGGACAGCGCCAACGCGCCTGGATCGCCATGGCCGTCGCCCAGGGCACCCCCGTGATGCTGCT
GGACGAGCCGACGACGTACCTCGACCTCGCCCACCAGATCGACGTCCTCGACCTGGTCACCGACCTCAACCGGCACGGCG
GCCGCACCGTCGTCATGGTCCTGCACGACCTCAACCAGGCCTGCCGGTACGCCGACCACATCATCGCCATGAAGGGCGGG
CGCATCGTGGGCGAGGGCGCCCCCGCCGACGTCATCACCGCCGAGACGGTCGAGGACGTCTTCGGACTGCGCTGCGTCGT
CGGCGAGGACCCGGTCAGCCGTACCCCCCTGGTCATCCCGATGGGCCGTCATCACGAGGGAACCGGCGTGGACGCGGCGC
AGGCCGCGGTGTCCGTGTCGGGCGCCACCGGCTGA

Protein sequence : 
MSSTYEPDAERATRADAPADGRAAGPELRAEGLRLAYDDRIVVDGLDLIVPTGRVTAIVGANACGKSTLLRALARLLTPK
AGAVHLDGRAVHTIPARTLAQKLGILPQTPVAPEGLTVVDLVGRGRTPHQTWWRQWSRSDEEAVHEALRATGTTDLAHRP
VDELSGGQRQRAWIAMAVAQGTPVMLLDEPTTYLDLAHQIDVLDLVTDLNRHGGRTVVMVLHDLNQACRYADHIIAMKGG
RIVGEGAPADVITAETVEDVFGLRCVVGEDPVSRTPLVIPMGRHHEGTGVDAAQAAVSVSGATG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-62 58
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-56 47
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-56 47
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-56 47
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-56 47
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-49 46
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 2e-58 45
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 2e-58 45
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-45 43
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 9e-32 42
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-46 41
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-46 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-46 41
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-46 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCAB_85501 YP_003494018.1 siderophore ABC transporter ATP-binding protein BAC0164 Protein 6e-50 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCAB_85501 YP_003494018.1 siderophore ABC transporter ATP-binding protein VFG0925 Protein 3e-65 54
SCAB_85501 YP_003494018.1 siderophore ABC transporter ATP-binding protein VFG1042 Protein 6e-50 46