Gene Information

Name : SCAB_71681 (SCAB_71681)
Accession : YP_003492698.1
Strain : Streptomyces scabiei 87.22
Genome accession: NC_013929
Putative virulence/resistance : Virulence
Product : iron-siderophore uptake system ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 7930068 - 7931039 bp
Length : 972 bp
Strand : +
Note : Nterminal extension compared with similar proteins poss. encodes TonB receptor protein signature

DNA sequence : 
ATGAAGCCGGGCGCCCACGAACGCCGGGTGGGACATGCACGCCGGGCGGACATGAACGAGAACGACCGCGCGCCGGCGCA
TGCGAACCACCGTGCGAATGACCGCGCGCCGGCGCACGCGAACGACAAGAGGAGCACCGTGAACCGTCTGTCCGCCGAGA
ACGTCACCCTCGCCTACGACCAGCGGGTCATCGCCGAGCAGCTGTCGGTGGAGATACCCGACCACTCGTTCACCGTGATC
GTCGGCCCCAACGCCTGCGGCAAGTCCACGCTGCTGCGGGCCCTGTCGCGGATGCTGAAGCCGTCCCGGGGACGGGTGCT
GCTGGACGGGCAGGTCATCCAGTCGATGCCCGCCAAGAAGGTGGCCCGGACGCTCGGCCTGCTGCCGCAGTCGTCGATCG
CGCCCGACGGGATCACCGTCGGCGATCTGGTGGGCCGGGGCCGGTACCCGCACCAGGGGCTGCTGCGGCAGTGGTCCGCC
GAGGACGAGCGCATCGTGCGCGAGTCGATGGAGTCGACCGGGGTCGCCGAACTGGCCGACAGGTACGTCGACGAGCTGTC
CGGCGGTCAGCGCCAGCGGGTCTGGATCGCCATGGCGCTGGCCCAGCAGACCCCGCTGCTGCTGCTCGACGAGCCGACCA
CCTTCCTGGACATCCAGCACCAGATCGACGTGCTCGACCTGTGCGCCGAACTCCACGAGGAACAGGGCCGCACCCTGGTC
GCGGTACTGCACGACCTCAACCACGCCGCCCGCTACGCCACCCACCTCATCGCCCTGCGCGACGGCGTGGTGATCGCCGA
GGGCGCGCCCTCCGAGATCGTCACGGCCGGGCTGGTCGAGGAGGTGTTCGGGTTGCGCTGTCAGGTCATCGACGACCCGG
AGACGGGGACGCCGCTGGTGGTGCCCGCGGCACGCGGGGCACGGGCCGGCGCCGAGCGGACCGTGCGGGCGGCCGCTACA
GCAGCTTCCTGA

Protein sequence : 
MKPGAHERRVGHARRADMNENDRAPAHANHRANDRAPAHANDKRSTVNRLSAENVTLAYDQRVIAEQLSVEIPDHSFTVI
VGPNACGKSTLLRALSRMLKPSRGRVLLDGQVIQSMPAKKVARTLGLLPQSSIAPDGITVGDLVGRGRYPHQGLLRQWSA
EDERIVRESMESTGVAELADRYVDELSGGQRQRVWIAMALAQQTPLLLLDEPTTFLDIQHQIDVLDLCAELHEEQGRTLV
AVLHDLNHAARYATHLIALRDGVVIAEGAPSEIVTAGLVEEVFGLRCQVIDDPETGTPLVVPAARGARAGAERTVRAAAT
AAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-64 52
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 9e-66 49
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 9e-66 49
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 9e-66 49
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 9e-66 49
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 4e-60 48
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 4e-60 48
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 4e-50 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 9e-52 43
irp6C NP_938506.1 ATP-binding protein Irp6C Not tested Not named Protein 6e-27 41
irp6C YP_005124377.1 ATP-binding protein Irp6C Virulence Not named Protein 1e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCAB_71681 YP_003492698.1 iron-siderophore uptake system ATP-binding protein BAC0164 Protein 2e-50 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCAB_71681 YP_003492698.1 iron-siderophore uptake system ATP-binding protein VFG0925 Protein 3e-79 62
SCAB_71681 YP_003492698.1 iron-siderophore uptake system ATP-binding protein VFG1042 Protein 2e-50 46