Gene Information

Name : SCAB_54291 (SCAB_54291)
Accession : YP_003491003.1
Strain : Streptomyces scabiei 87.22
Genome accession: NC_013929
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 6028467 - 6029255 bp
Length : 789 bp
Strand : +
Note : -

DNA sequence : 
GTGACATCGGCTGTGACCATCACCAGGCACGGGGGTACTGGAGGGACTACGGCCGTTGCCGCGCGGGCGCGGCAGGTCGT
CAAGGCGTACGGGTCCGGGGAGACCCGCGTCGTCGCCCTCGACCACGTGGACGTGGACATCGCGCGGGGCCGGTTCACCG
CGATCATGGGCCCCTCGGGGTCCGGCAAGTCCACCCTCATGCACTGCCTCGCCGGACTCGACACCGTGTCGTCGGGTCAG
ATCTACCTCGACGACACCGAGATCACCGGACTCAAGGACAAGAAGCTCACGCAGCTGCGCCGGGACCGGATCGGGTTCAT
CTTCCAGGCGTTCAACCTGCTGCCCACGCTGAACGCGATCGAGAACATCACGCTCCCGATGGACATCGCGGGGCGCAAGC
CGAACAAGGAGTGGCTGGGCCGGGTCGTCGACACCGTCGGCCTGAGCGACCGGCTCAAGCACCGGCCCACCCAGCTCTCC
GGCGGCCAGCAGCAGCGCGTCGCCGTGGCCCGGGCGCTGGCCGCCCGGCCGGAGATCATCTTCGGCGACGAGCCGACCGG
CAACCTGGACTCCCGGGCCGGCGCCGAGGTCCTGGGCTTCCTGCGCAGGTCGGTCGACGAACTGGGCCAGACCATCGTGA
TGGTCACCCACGACCCGGTGGCCGCCTCGTACGCGGACCGCGTGCTGTACCTGGCGGACGGCCGCATCGTCGACGAGATG
CTCAAGCCGACCGCCGACACCGTGCTGGACCGGATGAAGGACTTCGACGCCCGGGGGCGTACCTCATGA

Protein sequence : 
MTSAVTITRHGGTGGTTAVAARARQVVKAYGSGETRVVALDHVDVDIARGRFTAIMGPSGSGKSTLMHCLAGLDTVSSGQ
IYLDDTEITGLKDKKLTQLRRDRIGFIFQAFNLLPTLNAIENITLPMDIAGRKPNKEWLGRVVDTVGLSDRLKHRPTQLS
GGQQQRVAVARALAARPEIIFGDEPTGNLDSRAGAEVLGFLRRSVDELGQTIVMVTHDPVAASYADRVLYLADGRIVDEM
LKPTADTVLDRMKDFDARGRTS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-33 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-36 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 7e-36 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-36 43
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 3e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCAB_54291 YP_003491003.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 2e-40 47
SCAB_54291 YP_003491003.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 2e-36 47
SCAB_54291 YP_003491003.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 1e-38 45
SCAB_54291 YP_003491003.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 8e-33 44